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Sample GSM36483 Query DataSets for GSM36483
Status Public on Apr 01, 2005
Title Nor:Hypo rep 2
Sample type RNA
 
Channel 1
Source name Hypoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 47644
Comparison of hypoxia treated cells with untreated cells.
Array Print: Hs-OperonV2-vB1.2p10-082503
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 0.563 1.477 1 1 1 511 141 113 234 554 119 219 428 0 0.563
1174364_1 0.980 1.972 1 1 2 2142 631 91 243 1495 313 202 435 0 0.980
1175152_1 0.000 1.000 1 1 3 1250 374 91 176 1636 488 195 209 0 0.000
1175940_1 -0.405 0.755 1 1 4 1207 182 88 92 2028 248 186 323 0 -0.405
1176716_1 0.221 1.165 1 1 5 2437 501 73 43 2702 383 180 90 0 0.221
1177504_1 0.234 1.176 1 1 6 2211 760 89 75 2435 914 192 108 0 0.234
1178580_1 0.130 1.094 1 1 7 1723 417 88 68 2053 406 195 94 0 0.130
1179356_1 0.635 1.553 1 1 8 600 160 83 55 583 143 169 99 0 0.635
1180144_1 0.170 1.125 1 1 9 2071 579 87 134 2376 999 183 223 0 0.170
1180932_1 0.219 1.164 1 1 10 362 143 84 63 463 120 166 100 0 0.219
1181708_1 -0.626 0.648 1 1 11 291 121 81 172 568 147 165 161 0 -0.626
1182496_1 -1.530 0.346 1 1 12 157 80 74 51 453 134 155 89 0 -1.530
1183572_1 0.523 1.437 1 1 13 653 248 75 39 624 188 124 102 0 0.523
1184348_1 -0.124 0.918 1 1 14 307 129 73 42 419 123 102 59 0 -0.124
1185136_1 3.454 1 1 15 97 50 72 42 96 40 87 48 -50 1.788
1185924_1 -0.050 0.966 1 1 16 269 104 74 44 340 119 89 44 0 -0.050
1186700_1 0.797 1.737 1 1 17 1850 500 80 48 1362 275 95 45 0 0.797
1187488_1 0.137 1.100 1 1 18 936 240 77 61 1062 238 91 45 0 0.137
1188564_1 0.777 1.713 1 1 19 10883 2088 78 97 7930 1767 89 104 0 0.777
1189340_1 -0.079 0.947 1 1 20 595 206 87 115 761 199 94 134 0 -0.079

Total number of rows: 21794

Table truncated, full table size 1433 Kbytes.




Supplementary data files not provided
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