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Status
Public on Aug 26, 2011
Title
Expression data of LM-138
Sample type
RNA
Source name
Colorecal Cancer, Patient_138
Organism
Homo sapiens Characteristics
tissue: Colorecal Cancer
Extracted molecule
total RNA
Extraction protocol
Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label
biotin
Label protocol
Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
TRAINING, LM-N
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Dec 22, 2008
Last update date
Aug 26, 2011
Contact name
Toshiaki Watanabe
Phone
81-3-5800-8653
Organization name
University of Tokyo
Department
Department of Surgical Oncology
Street address
7-3-1, Hongo
City
Bunkyo-ku
State/province
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL570 Series (2)
GSE14095 Gene expression signature and the prediction of liver metastasis in colorectal cancer by DNA microarray
GSE19860 Prediction of response to FOLFOX
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Data table ID_REF VALUE ABS_CALL 1552256_a_at
359.7
P
1552257_a_at
552.3
P
1552258_at
41.8
A
1552261_at
3.1
A
1552263_at
100.9
P
1552264_a_at
144.4
P
1552266_at
30.2
A
1552269_at
15.4
A
1552271_at
3.3
A
1552272_a_at
28.6
P
1552274_at
103
P
1552275_s_at
42
P
1552276_a_at
7.7
A
1552277_a_at
111.3
P
1552278_a_at
20.3
A
1552279_a_at
59.3
A
1552280_at
6.5
A
1552281_at
166.8
P
1552283_s_at
117.3
P
1552286_at
60.4
P
54675 940 Kbytes .Supplementary data files not provided Processed data included within Sample table
