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Sample GSM3511168 Query DataSets for GSM3511168
Status Public on Dec 14, 2019
Title rat-model group-repF6
Sample type RNA
Source name rat-model group-kidney
Organism Rattus norvegicus
Characteristics strain: Sprague Dawley
sample group: doxorubicin nephropathy model
tissue: renal tissues
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Ligation Mix Biotin (Affymetrix)
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 16 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console (AGCC)
Description miRNA expression data from model group
Data processing The data were preprocessed with R/Bioconductor package Affy ,and the processing algorithm used Range Migration Algorithm (RMA)
Submission date Dec 13, 2018
Last update date Dec 15, 2019
Contact name Xiulan Wang
Organization name Inner Mongolia University For The Nationlities
Department Affiliated Hospital
Street address HuoLinhe
City Tongliao
State/province Inner Mongolia
ZIP/Postal code 028000
Country China
Platform ID GPL19117
Series (1)
GSE123776 microRNA expression profile in renal tissues of rats with doxorubicin nephropathy by Mongolian medicine Narenmandula

Data table header descriptions
VALUE RMA signal intensity

Data table
14q0_st 0.763711339
14qI-1_st 0.239267905
14qI-1_x_st 0.271684524
14qI-2_st 0.124580214
14qI-3_x_st 0.230191793
14qI-4_st 0.351245312
14qI-4_x_st 0.363420749
14qI-5_st 0.393498443
14qI-6_st 0.216462325
14qI-7_st 0.916250279
14qI-8_st 0.483995997
14qI-8_x_st 0.27797869
14qI-9_x_st 0.128130138
14qII-1_st 0.411505275
14qII-1_x_st 0.428377408
14qII-10_st 0.317816106
14qII-11_st 0.41878209
14qII-12_st 0.468772578
14qII-12_x_st 0.589155506
14qII-13_st -0.003759504

Total number of rows: 36353

Table truncated, full table size 985 Kbytes.

Supplementary file Size Download File type/resource
GSM3511168_F6.CEL.gz 717.5 Kb (ftp)(http) CEL
Processed data included within Sample table

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