GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM3511162 Query DataSets for GSM3511162
Status Public on Dec 14, 2019
Title rat-normal group-repE2
Sample type RNA
Source name rat-normal group-kidney
Organism Rattus norvegicus
Characteristics strain: Sprague Dawley
sample group: normal
tissue: renal tissues
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Ligation Mix Biotin (Affymetrix)
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 16 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console (AGCC)
Description miRNA expression data from normal group
Data processing The data were preprocessed with R/Bioconductor package Affy ,and the processing algorithm used Range Migration Algorithm (RMA)
Submission date Dec 13, 2018
Last update date Dec 15, 2019
Contact name Xiulan Wang
Organization name Inner Mongolia University For The Nationlities
Department Affiliated Hospital
Street address HuoLinhe
City Tongliao
State/province Inner Mongolia
ZIP/Postal code 028000
Country China
Platform ID GPL19117
Series (1)
GSE123776 microRNA expression profile in renal tissues of rats with doxorubicin nephropathy by Mongolian medicine Narenmandula

Data table header descriptions
VALUE RMA signal intensity

Data table
14q0_st 0.197903078
14qI-1_st 0.642207087
14qI-1_x_st 0.519920602
14qI-2_st 0.32328088
14qI-3_x_st 0.161484128
14qI-4_st 0.295935856
14qI-4_x_st 0.120613986
14qI-5_st 0.119631691
14qI-6_st 0.310885122
14qI-7_st 0.356489645
14qI-8_st 0.284872104
14qI-8_x_st 0.280637304
14qI-9_x_st 0.061554036
14qII-1_st 0.320415365
14qII-1_x_st 0.428377408
14qII-10_st 0.250306032
14qII-11_st 0.502198531
14qII-12_st 0.555986764
14qII-12_x_st 0.381426031
14qII-13_st -0.136573736

Total number of rows: 36353

Table truncated, full table size 985 Kbytes.

Supplementary file Size Download File type/resource
GSM3511162_E2.CEL.gz 698.2 Kb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap