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Sample GSM350620 Query DataSets for GSM350620
Status Public on Mar 17, 2009
Title AR3_Control_22Rv1
Sample type RNA
 
Channel 1
Source name 22Rv1 cell treated with shAR3-1
Organism Homo sapiens
Characteristics 22Rv1 cells treated with shAR3-1
Extracted molecule total RNA
Extraction protocol see manufacturer's web site at http://www.agilent.com/
Label Cy5
Label protocol see manufacturer's web site at http://www.agilent.com/
 
Channel 2
Source name scrambled shRNA control of 22Rv1 cells
Organism Homo sapiens
Characteristics The scrambled shRNA control of 22Rv1 cells
Extracted molecule total RNA
Extraction protocol see manufacturer's web site at http://www.agilent.com/
Label Cy3
Label protocol see manufacturer's web site at http://www.agilent.com/
 
 
Hybridization protocol Hybridization was carried out using the conditions specified in the Agilent Human Whole Genome Expression system. See manufacturer's web site at http://www.agilent.com/
Scan protocol Scanned images were processed for quality assessment and preprocessing of image data using the Agilent Feature Extraction software. See manufacturer's web site at http://www.agilent.com/
Description See manufacturer's web site at http://www.agilent.com/
Data processing The software quantifies feature signals and their background, performs dye normalization and calculates feature log ratios and error estimates. The error estimates, based on an extensive error model and pixel level statistics calculated from the feature and background for each spot, are used to generate a p-value for each log ratio.
 
Submission date Dec 11, 2008
Last update date Mar 17, 2009
Contact name Hegang Chen
Organization name University of Maryland School of Medicine
Street address 660 West Redwood Street
City Baltimore
State/province MD
ZIP/Postal code 21201
Country USA
 
Platform ID GPL4133
Series (1)
GSE13919 A Novel Androgen Receptor Splice Variant Is Upregulated during Prostate Cancer Progression

Data table header descriptions
ID_REF
VALUE Log(REDsignal/GREENsignal) per feature(processed signals used)
PValueLogRatio Significance level of the Log Ratio computed for a feature
gProcessedSignal Dye-normalized signal after surrogate algorithm, green channel
rProcessedSignal Dye-normalized signal after surrogate algorithm, red channel

Data table
ID_REF VALUE PValueLogRatio gProcessedSignal rProcessedSignal
1 -2.44E-02 6.92E-01 1.06E+05 1.00E+05
2 0.00E+00 1.00E+00 4.78E+00 1.80E+00
3 0.00E+00 1.00E+00 4.76E+00 1.79E+00
4 -5.35E-01 3.89E-01 6.17E+00 1.80E+00
5 0.00E+00 1.00E+00 4.73E+00 1.78E+00
6 0.00E+00 1.00E+00 4.71E+00 1.77E+00
7 0.00E+00 1.00E+00 4.69E+00 1.77E+00
8 0.00E+00 1.00E+00 4.68E+00 1.76E+00
9 0.00E+00 1.00E+00 4.67E+00 1.76E+00
10 0.00E+00 1.00E+00 4.65E+00 1.75E+00
11 0.00E+00 1.00E+00 4.64E+00 1.74E+00
12 -1.88E-02 7.60E-01 1.04E+03 9.95E+02
13 -9.23E-02 1.52E-01 1.23E+02 9.96E+01
14 -3.75E-02 5.42E-01 6.47E+02 5.93E+02
15 -4.93E-02 4.34E-01 1.53E+02 1.36E+02
16 -9.42E-03 8.78E-01 2.36E+04 2.31E+04
17 -2.56E-02 6.99E-01 8.08E+01 7.62E+01
18 -1.60E-02 7.95E-01 4.16E+02 4.01E+02
19 7.95E-02 1.98E-01 4.21E+04 5.05E+04
20 4.68E-02 4.79E-01 7.74E+01 8.62E+01

Total number of rows: 45015

Table truncated, full table size 1856 Kbytes.




Supplementary file Size Download File type/resource
GSM350620.txt.gz 14.2 Mb (ftp)(http) TXT
Processed data included within Sample table
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