NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM349728 Query DataSets for GSM349728
Status Public on Mar 06, 2009
Title Gorilla_Orang_Bahati_Susie
Sample type genomic
 
Channel 1
Source name Gorilla_Bahati
Organism Gorilla gorilla
Characteristics DNA from Gorilla Bahati
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Orang_Susie
Organism Pongo abelii
Characteristics DNA from Orangutan Susie
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 09, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_130673CB39072_532
REF_130673CB39072_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_130673CB39072_532 REF_130673CB39072_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS100175400 8.440 8.065 0.375 8.263 8.537 0.274 -0.274
CHR10FS100175700 10.818 10.194 0.625 10.724 10.473 -0.251 0.251
CHR10FS100176100 10.512 9.928 0.583 10.401 10.239 -0.162 0.162
CHR10FS100176907 9.758 9.107 0.651 9.612 9.505 -0.108 0.108
CHR10FS100177007 9.544 9.340 0.204 9.389 9.715 0.326 -0.326
CHR10FS100177807 11.229 10.916 0.313 11.154 11.120 -0.035 0.035
CHR10FS100178207 9.593 10.213 -0.619 9.440 10.490 1.05 -1.050
CHR10FS100178507 10.180 9.862 0.318 10.055 10.179 0.125 -0.125
CHR10FS100179107 9.503 9.342 0.162 9.346 9.716 0.37 -0.370
CHR10FS100179807 10.324 9.097 1.227 10.205 9.495 -0.71 0.710
CHR10FS100180100 10.467 10.256 0.211 10.355 10.528 0.173 -0.173
CHR10FS100180700 10.313 10.124 0.189 10.194 10.412 0.218 -0.218
CHR10FS100181200 10.254 10.004 0.250 10.132 10.305 0.173 -0.173
CHR10FS100182000 10.191 9.493 0.698 10.065 9.851 -0.214 0.214
CHR10FS100182500 11.159 10.373 0.786 11.081 10.631 -0.45 0.450
CHR10FS100183100 10.787 10.781 0.005 10.691 10.998 0.307 -0.307
CHR10FS100183308 11.159 10.492 0.667 11.081 10.740 -0.34 0.340
CHR10FS100183708 9.968 10.498 -0.530 9.830 10.745 0.915 -0.915
CHR10FS100184308 10.815 10.701 0.114 10.720 10.926 0.206 -0.206
CHR10FS100185008 11.857 11.073 0.784 11.803 11.260 -0.543 0.543

Total number of rows: 385283

Table truncated, full table size 23447 Kbytes.




Supplementary file Size Download File type/resource
GSM349728_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349728_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap