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Sample GSM349726 Query DataSets for GSM349726
Status Public on Mar 06, 2009
Title Orang_Human_AG05252_NA15510
Sample type genomic
 
Channel 1
Source name Orang_AG05252
Organism Pongo pygmaeus pygmaeus
Characteristics DNA from Orangutan AG05252
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 09, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7749
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_227593CB400811_532
REF_227593CB400811_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_227593CB400811_532 REF_227593CB400811_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS010095100 9.797 8.791 1.007 9.321 9.523 -0.203
CHR10FS010095500 11.784 11.767 0.017 11.897 11.714 0.182
CHR10FS010096000 10.066 9.722 0.344 9.777 10.080 -0.304
CHR10FS010096450 9.613 7.823 1.790 9.021 9.099 -0.078
CHR10FS010096850 9.997 7.870 2.126 9.663 9.117 0.547
CHR10FS010097550 9.645 7.460 2.185 9.069 8.970 0.099
CHR10FS010097950 10.079 8.518 1.560 9.798 9.387 0.411
CHR10FS010098950 9.841 7.386 2.456 9.396 8.944 0.451
CHR10FS010099400 10.687 10.503 0.184 10.653 10.655 -0.002
CHR10FS010099850 10.148 9.649 0.499 9.908 10.032 -0.124
CHR10FS010100250 10.002 8.159 1.842 9.672 9.231 0.441
CHR10FS010100750 9.922 8.770 1.152 9.537 9.513 0.024
CHR10FS010101100 9.945 10.136 -0.191 9.574 10.376 -0.802
CHR10FS010101550 12.127 10.770 1.357 12.250 10.865 1.384
CHR10FS010102050 10.642 9.953 0.689 10.597 10.241 0.356
CHR10FS010102550 9.828 8.602 1.226 9.372 9.425 -0.052
CHR10FS010102950 10.182 9.654 0.528 9.960 10.035 -0.075
CHR10FS010103350 11.460 11.077 0.383 11.556 11.119 0.437
CHR10FS010103800 10.350 9.546 0.804 10.204 9.965 0.239
CHR10FS010104350 10.702 9.943 0.759 10.672 10.233 0.438

Total number of rows: 385027

Table truncated, full table size 21196 Kbytes.




Supplementary file Size Download File type/resource
GSM349726_532.pair.gz 6.2 Mb (ftp)(http) PAIR
GSM349726_635.pair.gz 6.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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