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Sample GSM349721 Query DataSets for GSM349721
Status Public on Mar 06, 2009
Title Orang_Orang_Puti_Susie
Sample type genomic
 
Channel 1
Source name Orang_Puti
Organism Pongo abelii
Characteristics DNA from Orangutan Puti
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Orang_Susie
Organism Pongo abelii
Characteristics DNA from Orangutan Susie
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 09, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_145601CB24085_532
REF_145601CB24085_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_145601CB24085_532 REF_145601CB24085_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 8.793 8.128 0.665 8.468 8.685 -0.218
CHR10FS100175700 11.357 10.566 0.792 11.165 10.926 0.239
CHR10FS100176100 9.693 9.170 0.523 9.379 9.723 -0.344
CHR10FS100176907 9.426 8.648 0.778 9.106 9.226 -0.120
CHR10FS100177007 9.142 8.740 0.402 8.819 9.315 -0.496
CHR10FS100177807 11.001 10.918 0.083 10.769 11.219 -0.450
CHR10FS100178207 9.337 9.686 -0.349 9.015 10.180 -1.164
CHR10FS100178507 10.786 9.864 0.923 10.535 10.333 0.201
CHR10FS100179107 9.719 8.706 1.013 9.406 9.283 0.124
CHR10FS100179807 8.924 8.104 0.819 8.599 8.658 -0.060
CHR10FS100180100 9.603 9.265 0.339 9.286 9.809 -0.523
CHR10FS100180700 10.373 10.489 -0.116 10.094 10.862 -0.768
CHR10FS100181200 9.552 9.593 -0.041 9.234 10.101 -0.867
CHR10FS100182000 9.881 9.149 0.732 9.574 9.703 -0.129
CHR10FS100182500 11.795 10.196 1.599 11.658 10.616 1.042
CHR10FS100183100 11.415 10.967 0.448 11.231 11.260 -0.029
CHR10FS100183308 10.948 10.722 0.226 10.710 11.058 -0.347
CHR10FS100183708 9.869 9.318 0.551 9.562 9.858 -0.295
CHR10FS100184308 11.173 10.887 0.286 10.956 11.193 -0.237
CHR10FS100185008 10.587 10.489 0.098 10.321 10.862 -0.541

Total number of rows: 385283

Table truncated, full table size 21005 Kbytes.




Supplementary file Size Download File type/resource
GSM349721_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349721_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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