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Sample GSM349718 Query DataSets for GSM349718
Status Public on Mar 06, 2009
Title Orang_Orang_Hati_Susie
Sample type genomic
 
Channel 1
Source name Orang_Hati
Organism Pongo abelii
Characteristics DNA from Orangutan Hati
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Orang_Susie
Organism Pongo abelii
Characteristics DNA from Orangutan Susie
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 09, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_195189CB16086_532
REF_195189CB16086_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_195189CB16086_532 REF_195189CB16086_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.734 8.937 0.797 9.505 9.249 0.256
CHR10FS100175700 11.045 10.845 0.199 10.858 11.071 -0.213
CHR10FS100176100 11.666 11.560 0.106 11.523 11.722 -0.199
CHR10FS100176907 10.345 10.025 0.319 10.126 10.307 -0.181
CHR10FS100177007 9.657 9.569 0.088 9.426 9.871 -0.446
CHR10FS100177807 11.294 11.020 0.274 11.124 11.232 -0.108
CHR10FS100178207 10.965 10.558 0.407 10.775 10.807 -0.032
CHR10FS100178507 10.376 9.816 0.560 10.158 10.109 0.050
CHR10FS100179107 10.575 10.105 0.470 10.364 10.383 -0.018
CHR10FS100179807 9.476 9.154 0.322 9.247 9.465 -0.219
CHR10FS100180100 10.402 10.144 0.257 10.183 10.419 -0.236
CHR10FS100180700 10.986 10.780 0.206 10.797 11.012 -0.215
CHR10FS100181200 10.401 10.160 0.241 10.183 10.433 -0.251
CHR10FS100182000 10.773 10.200 0.574 10.571 10.470 0.101
CHR10FS100182500 11.423 10.625 0.798 11.262 10.868 0.394
CHR10FS100183100 11.904 11.488 0.416 11.779 11.657 0.122
CHR10FS100183308 11.259 10.670 0.588 11.085 10.910 0.175
CHR10FS100183708 11.320 11.113 0.207 11.152 11.317 -0.165
CHR10FS100184308 11.271 10.977 0.294 11.098 11.192 -0.094
CHR10FS100185008 11.447 11.167 0.280 11.287 11.367 -0.080

Total number of rows: 385283

Table truncated, full table size 21158 Kbytes.




Supplementary file Size Download File type/resource
GSM349718_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349718_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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