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Sample GSM349702 Query DataSets for GSM349702
Status Public on Mar 06, 2009
Title Orang_Orang_AG12256_Susie
Sample type genomic
 
Channel 1
Source name Orang_AG12256
Organism Pongo abelii
Characteristics DNA from Orangutan AG12256
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Orang_Susie
Organism Pongo abelii
Characteristics DNA from Orangutan Susie
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 09, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_195176CB16085_532
REF_195176CB16085_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_195176CB16085_532 REF_195176CB16085_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.048 8.391 0.657 8.822 8.718 0.105
CHR10FS100175700 10.431 9.627 0.804 10.277 9.875 0.402
CHR10FS100176100 9.718 9.524 0.193 9.517 9.780 -0.263
CHR10FS100176907 9.914 9.306 0.609 9.723 9.574 0.149
CHR10FS100177007 9.551 9.210 0.341 9.340 9.483 -0.143
CHR10FS100177807 10.860 10.902 -0.042 10.748 11.027 -0.279
CHR10FS100178207 9.594 9.600 -0.007 9.385 9.850 -0.465
CHR10FS100178507 10.263 9.916 0.346 10.097 10.139 -0.042
CHR10FS100179107 9.516 8.833 0.683 9.303 9.118 0.186
CHR10FS100179807 9.026 8.558 0.468 8.800 8.857 -0.057
CHR10FS100180100 9.183 8.826 0.357 8.958 9.111 -0.152
CHR10FS100180700 9.868 9.648 0.220 9.675 9.894 -0.219
CHR10FS100181200 9.214 8.943 0.271 8.991 9.225 -0.234
CHR10FS100182000 9.680 9.268 0.413 9.477 9.538 -0.061
CHR10FS100182500 10.837 10.178 0.659 10.722 10.378 0.344
CHR10FS100183100 11.040 10.818 0.223 10.946 10.950 -0.004
CHR10FS100183308 11.205 10.780 0.425 11.131 10.917 0.213
CHR10FS100183708 10.291 9.738 0.553 10.127 9.977 0.151
CHR10FS100184308 11.014 10.612 0.402 10.917 10.768 0.149
CHR10FS100185008 10.406 10.312 0.094 10.249 10.500 -0.250

Total number of rows: 385283

Table truncated, full table size 20841 Kbytes.




Supplementary file Size Download File type/resource
GSM349702_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349702_635.pair.gz 6.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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