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Sample GSM349698 Query DataSets for GSM349698
Status Public on Mar 06, 2009
Title Orang_Orang_AG06105_Susie
Sample type genomic
 
Channel 1
Source name Orang_AG06105
Organism Pongo abelii
Characteristics DNA from Orangutan AG06105
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Orang_Susie
Organism Pongo abelii
Characteristics DNA from Orangutan Susie
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 09, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_195169CB16084_532
REF_195169CB16084_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_195169CB16084_532 REF_195169CB16084_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.864 9.015 0.849 9.606 9.412 0.194
CHR10FS100175700 11.204 11.044 0.160 11.072 11.217 -0.145
CHR10FS100176100 11.264 10.566 0.697 11.140 10.800 0.340
CHR10FS100176907 10.744 10.030 0.714 10.562 10.328 0.235
CHR10FS100177007 9.903 10.248 -0.345 9.648 10.519 -0.871
CHR10FS100177807 11.244 11.529 -0.285 11.117 11.643 -0.526
CHR10FS100178207 10.983 10.967 0.016 10.827 11.150 -0.324
CHR10FS100178507 10.365 10.089 0.275 10.147 10.380 -0.232
CHR10FS100179107 10.233 9.653 0.580 10.003 9.996 0.007
CHR10FS100179807 9.259 8.782 0.477 8.971 9.193 -0.221
CHR10FS100180100 10.021 9.627 0.394 9.776 9.973 -0.198
CHR10FS100180700 10.725 11.108 -0.384 10.541 11.275 -0.734
CHR10FS100181200 10.245 10.281 -0.036 10.016 10.549 -0.533
CHR10FS100182000 10.620 10.031 0.588 10.425 10.329 0.096
CHR10FS100182500 11.421 10.706 0.715 11.316 10.921 0.395
CHR10FS100183100 11.646 11.391 0.255 11.562 11.521 0.041
CHR10FS100183308 11.651 11.340 0.311 11.567 11.476 0.092
CHR10FS100183708 11.575 10.844 0.731 11.485 11.041 0.444
CHR10FS100184308 11.394 11.153 0.241 11.285 11.314 -0.029
CHR10FS100185008 11.361 11.025 0.336 11.248 11.200 0.048

Total number of rows: 385283

Table truncated, full table size 21220 Kbytes.




Supplementary file Size Download File type/resource
GSM349698_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349698_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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