NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM349595 Query DataSets for GSM349595
Status Public on Mar 06, 2009
Title Chimp_Chimp_PR00238_Clint
Sample type genomic
 
Channel 1
Source name Chimp_PR00238
Organism Pan troglodytes
Characteristics DNA from Chimpanzee PR00238
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Chimp_Clint
Organism Pan troglodytes
Characteristics DNA from Chimpanzee Clint
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_148605CB10081_532
REF_148605CB10081_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_148605CB10081_532 REF_148605CB10081_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.228 8.421 0.807 8.953 8.805 0.148
CHR10FS100175700 10.225 9.546 0.680 10.064 9.773 0.292
CHR10FS100176100 10.402 10.380 0.022 10.258 10.521 -0.263
CHR10FS100176907 9.803 8.958 0.845 9.599 9.259 0.340
CHR10FS100177007 9.573 8.771 0.802 9.342 9.096 0.246
CHR10FS100177807 11.025 11.301 -0.277 10.937 11.362 -0.425
CHR10FS100178207 9.806 9.292 0.515 9.603 9.551 0.051
CHR10FS100178507 10.014 9.953 0.062 9.832 10.137 -0.305
CHR10FS100179107 9.177 8.023 1.154 8.895 8.523 0.372
CHR10FS100179807 10.189 9.338 0.851 10.024 9.591 0.433
CHR10FS100180100 9.392 8.796 0.596 9.139 9.118 0.021
CHR10FS100180700 9.552 9.393 0.159 9.320 9.638 -0.319
CHR10FS100181200 8.935 8.671 0.264 8.634 9.012 -0.378
CHR10FS100182000 9.254 8.409 0.845 8.983 8.796 0.187
CHR10FS100182500 9.691 9.451 0.241 9.475 9.689 -0.214
CHR10FS100183100 10.200 9.779 0.421 10.037 9.981 0.056
CHR10FS100183308 11.072 10.781 0.291 10.987 10.884 0.103
CHR10FS100183708 10.586 10.205 0.381 10.459 10.364 0.095
CHR10FS100184308 10.783 10.579 0.204 10.677 10.703 -0.025
CHR10FS100185008 11.421 10.994 0.427 11.367 11.078 0.288

Total number of rows: 385283

Table truncated, full table size 20752 Kbytes.




Supplementary file Size Download File type/resource
GSM349595_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349595_635.pair.gz 6.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap