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Sample GSM349151 Query DataSets for GSM349151
Status Public on Mar 06, 2009
Title Human_Human_NA19129_NA15510
Sample type genomic
 
Channel 1
Source name Human_NA19129
Organism Homo sapiens
Characteristics DNA from Human NA19129
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_127567CB45073_532
REF_127567CB45073_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_127567CB45073_532 REF_127567CB45073_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 8.860 8.601 0.259 8.725 8.769 -0.044
CHR10FS100175700 10.532 10.878 -0.346 10.547 10.864 -0.317
CHR10FS100176100 10.910 11.113 -0.204 10.936 11.092 -0.156
CHR10FS100176907 10.103 10.307 -0.204 10.102 10.309 -0.207
CHR10FS100177007 9.128 9.056 0.073 9.035 9.160 -0.125
CHR10FS100177807 10.799 10.968 -0.169 10.823 10.950 -0.128
CHR10FS100178207 9.150 8.952 0.198 9.059 9.071 -0.011
CHR10FS100178507 10.039 10.039 -0.000 10.034 10.055 -0.021
CHR10FS100179107 8.984 9.333 -0.349 8.869 9.407 -0.538
CHR10FS100179807 9.853 9.796 0.056 9.835 9.829 0.006
CHR10FS100180100 10.214 10.498 -0.284 10.220 10.495 -0.275
CHR10FS100180700 8.922 8.849 0.074 8.797 8.980 -0.183
CHR10FS100181200 10.057 10.096 -0.038 10.054 10.109 -0.055
CHR10FS100182000 10.571 10.596 -0.025 10.589 10.589 0.000
CHR10FS100182500 11.747 11.723 0.024 11.784 11.694 0.090
CHR10FS100183100 11.348 11.369 -0.021 11.381 11.345 0.037
CHR10FS100183308 11.324 11.525 -0.201 11.356 11.497 -0.140
CHR10FS100183708 10.329 10.107 0.222 10.338 10.120 0.218
CHR10FS100184308 11.019 11.030 -0.011 11.048 11.010 0.038
CHR10FS100185008 11.104 11.444 -0.340 11.133 11.418 -0.285

Total number of rows: 385283

Table truncated, full table size 21363 Kbytes.




Supplementary file Size Download File type/resource
GSM349151_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349151_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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