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Sample GSM349119 Query DataSets for GSM349119
Status Public on Mar 06, 2009
Title Human_Human_NA18555_NA15510
Sample type genomic
 
Channel 1
Source name Human_NA18555
Organism Homo sapiens
Characteristics DNA from Human NA18555
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_127846CB37071_532
REF_127846CB37071_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_127846CB37071_532 REF_127846CB37071_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 8.687 8.573 0.114 8.619 8.666 -0.047
CHR10FS100175700 11.470 11.271 0.199 11.410 11.342 0.067
CHR10FS100176100 11.242 11.038 0.205 11.181 11.112 0.069
CHR10FS100176907 11.532 11.257 0.275 11.471 11.328 0.144
CHR10FS100177007 8.864 8.953 -0.089 8.798 9.044 -0.246
CHR10FS100177807 10.729 10.754 -0.025 10.666 10.829 -0.162
CHR10FS100178207 10.391 9.983 0.408 10.327 10.063 0.265
CHR10FS100178507 9.771 9.617 0.154 9.705 9.700 0.005
CHR10FS100179107 9.802 9.511 0.291 9.736 9.595 0.141
CHR10FS100179807 9.731 9.754 -0.023 9.666 9.837 -0.171
CHR10FS100180100 10.399 10.325 0.074 10.335 10.403 -0.068
CHR10FS100180700 10.224 9.885 0.340 10.159 9.965 0.194
CHR10FS100181200 9.967 9.918 0.049 9.902 9.999 -0.098
CHR10FS100182000 10.839 10.609 0.230 10.776 10.685 0.091
CHR10FS100182500 11.638 11.446 0.192 11.580 11.516 0.064
CHR10FS100183100 11.987 11.709 0.278 11.929 11.775 0.154
CHR10FS100183308 11.289 11.147 0.142 11.228 11.217 0.011
CHR10FS100183708 11.344 11.112 0.232 11.282 11.183 0.099
CHR10FS100184308 10.768 10.955 -0.187 10.706 11.029 -0.322
CHR10FS100185008 11.007 10.914 0.093 10.946 10.988 -0.043

Total number of rows: 385283

Table truncated, full table size 21310 Kbytes.




Supplementary file Size Download File type/resource
GSM349119_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349119_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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