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Sample GSM349117 Query DataSets for GSM349117
Status Public on Mar 06, 2009
Title Human_Human_NA19240_NA15510
Sample type genomic
 
Channel 1
Source name Human_NA19240
Organism Homo sapiens
Characteristics DNA from Human NA19240
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_195169CB01084_532
REF_195169CB01084_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_195169CB01084_532 REF_195169CB01084_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.318 8.383 0.935 8.967 8.921 0.046
CHR10FS100175700 11.466 11.126 0.339 11.417 11.201 0.216
CHR10FS100176100 11.250 11.058 0.192 11.183 11.139 0.044
CHR10FS100176907 10.704 10.060 0.645 10.581 10.258 0.323
CHR10FS100177007 9.981 9.157 0.824 9.756 9.510 0.246
CHR10FS100177807 11.525 11.403 0.123 11.482 11.453 0.029
CHR10FS100178207 9.977 9.448 0.529 9.752 9.745 0.007
CHR10FS100178507 10.175 9.974 0.201 9.980 10.183 -0.204
CHR10FS100179107 9.336 9.026 0.310 8.989 9.406 -0.417
CHR10FS100179807 10.686 10.146 0.540 10.560 10.331 0.228
CHR10FS100180100 10.657 10.503 0.154 10.527 10.643 -0.116
CHR10FS100180700 10.570 9.979 0.591 10.427 10.188 0.239
CHR10FS100181200 10.423 10.197 0.227 10.263 10.376 -0.112
CHR10FS100182000 10.817 10.082 0.735 10.705 10.277 0.428
CHR10FS100182500 11.410 11.273 0.137 11.357 11.335 0.023
CHR10FS100183100 11.376 11.778 -0.402 11.320 11.802 -0.482
CHR10FS100183308 11.062 10.912 0.149 10.977 11.006 -0.028
CHR10FS100183708 10.137 9.527 0.610 9.936 9.809 0.127
CHR10FS100184308 11.551 11.222 0.329 11.510 11.287 0.223
CHR10FS100185008 11.753 11.194 0.559 11.726 11.263 0.463

Total number of rows: 385283

Table truncated, full table size 21346 Kbytes.




Supplementary file Size Download File type/resource
GSM349117_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349117_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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