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Sample GSM349102 Query DataSets for GSM349102
Status Public on Mar 06, 2009
Title Human_Human_NA18517_NA15510
Sample type genomic
 
Channel 1
Source name Human_NA18517
Organism Homo sapiens
Characteristics DNA from Human NA18517
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13885 INTRA_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_148292CB01081_532
REF_148292CB01081_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_148292CB01081_532 REF_148292CB01081_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.496 8.359 1.137 9.173 8.908 0.265
CHR10FS100175700 10.974 10.767 0.207 10.890 10.875 0.016
CHR10FS100176100 11.062 10.848 0.213 10.986 10.947 0.040
CHR10FS100176907 11.162 10.334 0.828 11.095 10.492 0.603
CHR10FS100177007 9.887 9.248 0.639 9.643 9.583 0.059
CHR10FS100177807 10.990 10.985 0.005 10.907 11.070 -0.163
CHR10FS100178207 9.802 9.423 0.379 9.543 9.726 -0.183
CHR10FS100178507 10.502 10.239 0.263 10.357 10.411 -0.054
CHR10FS100179107 9.909 9.161 0.748 9.669 9.515 0.154
CHR10FS100179807 10.252 9.430 0.823 10.071 9.732 0.339
CHR10FS100180100 10.528 10.582 -0.054 10.387 10.708 -0.322
CHR10FS100180700 10.685 10.057 0.628 10.566 10.253 0.313
CHR10FS100181200 10.184 9.853 0.331 9.992 10.081 -0.089
CHR10FS100182000 10.710 10.417 0.294 10.595 10.563 0.032
CHR10FS100182500 11.352 11.258 0.094 11.303 11.319 -0.015
CHR10FS100183100 11.001 11.227 -0.225 10.920 11.291 -0.371
CHR10FS100183308 11.184 11.040 0.144 11.120 11.120 0.000
CHR10FS100183708 10.441 10.161 0.280 10.287 10.341 -0.054
CHR10FS100184308 11.033 10.976 0.057 10.955 11.062 -0.107
CHR10FS100185008 11.164 11.276 -0.112 11.098 11.335 -0.237

Total number of rows: 385283

Table truncated, full table size 21300 Kbytes.




Supplementary file Size Download File type/resource
GSM349102_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349102_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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