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Sample GSM349039 Query DataSets for GSM349039
Status Public on Mar 06, 2009
Title Human_Macaque_NA15510_ID17573
Sample type genomic
 
Channel 1
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Macaque_ID17573
Organism Macaca mulatta
Characteristics DNA from Macaque ID17573
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 08, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_129837CB34073_532
REF_129837CB34073_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_129837CB34073_532 REF_129837CB34073_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS100175400 8.376 8.059 0.317 8.399 8.400 0.001 -0.001
CHR10FS100175700 10.289 12.479 -2.190 10.274 12.598 2.324 -2.324
CHR10FS100176100 10.625 12.182 -1.557 10.604 12.309 1.705 -1.705
CHR10FS100176907 10.412 10.207 0.205 10.396 10.472 0.076 -0.076
CHR10FS100177007 8.696 9.775 -1.079 8.707 10.085 1.378 -1.378
CHR10FS100177807 10.917 9.469 1.448 10.883 9.814 -1.069 1.069
CHR10FS100178207 9.245 10.239 -0.994 9.245 10.501 1.255 -1.255
CHR10FS100178507 9.315 10.200 -0.885 9.313 10.465 1.152 -1.152
CHR10FS100179107 9.101 10.122 -1.021 9.104 10.397 1.293 -1.293
CHR10FS100179807 9.789 11.005 -1.216 9.784 11.199 1.415 -1.415
CHR10FS100180100 10.218 9.823 0.395 10.205 10.129 -0.076 0.076
CHR10FS100180700 9.619 9.151 0.467 9.615 9.526 -0.089 0.089
CHR10FS100181200 9.698 10.227 -0.529 9.692 10.490 0.798 -0.798
CHR10FS100182000 10.248 9.649 0.599 10.235 9.974 -0.26 0.260
CHR10FS100182500 11.000 9.589 1.411 10.963 9.921 -1.042 1.042
CHR10FS100183100 10.996 11.068 -0.072 10.959 11.259 0.299 -0.299
CHR10FS100183308 10.583 9.753 0.830 10.562 10.066 -0.496 0.496
CHR10FS100183708 9.722 10.566 -0.844 9.717 10.796 1.079 -1.079
CHR10FS100184308 10.700 10.860 -0.160 10.675 11.066 0.391 -0.391
CHR10FS100185008 11.050 9.864 1.187 11.013 10.164 -0.849 0.849

Total number of rows: 385283

Table truncated, full table size 23549 Kbytes.




Supplementary file Size Download File type/resource
GSM349039_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM349039_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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