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Sample GSM348297 Query DataSets for GSM348297
Status Public on Mar 06, 2009
Title Gorilla_Human_Bahati_NA15510
Sample type genomic
 
Channel 1
Source name Gorilla_Bahati
Organism Gorilla gorilla
Characteristics DNA from Gorilla Bahati
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_129498CB31073_532
REF_129498CB31073_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_129498CB31073_532 REF_129498CB31073_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 9.258 8.583 0.675 9.203 8.868 0.335
CHR10FS100175700 11.121 10.381 0.740 11.125 10.487 0.638
CHR10FS100176100 10.735 11.077 -0.342 10.724 11.130 -0.406
CHR10FS100176907 9.902 9.205 0.697 9.866 9.423 0.443
CHR10FS100177007 9.495 8.708 0.788 9.446 8.978 0.468
CHR10FS100177807 11.246 10.536 0.710 11.254 10.630 0.624
CHR10FS100178207 10.371 9.684 0.687 10.348 9.855 0.493
CHR10FS100178507 10.767 9.724 1.042 10.755 9.891 0.864
CHR10FS100179107 9.243 8.567 0.676 9.187 8.853 0.334
CHR10FS100179807 10.550 9.587 0.964 10.532 9.768 0.764
CHR10FS100180100 10.701 10.028 0.673 10.690 10.165 0.524
CHR10FS100180700 10.486 9.669 0.817 10.466 9.842 0.624
CHR10FS100181200 10.301 9.576 0.725 10.276 9.758 0.518
CHR10FS100182000 10.161 10.407 -0.246 10.132 10.512 -0.381
CHR10FS100182500 11.568 10.873 0.695 11.585 10.941 0.643
CHR10FS100183100 10.728 10.776 -0.048 10.717 10.852 -0.135
CHR10FS100183308 11.149 10.504 0.645 11.153 10.601 0.552
CHR10FS100183708 10.585 9.938 0.647 10.569 10.084 0.485
CHR10FS100184308 10.863 10.270 0.593 10.857 10.385 0.472
CHR10FS100185008 11.832 10.580 1.252 11.853 10.672 1.181

Total number of rows: 385283

Table truncated, full table size 21162 Kbytes.




Supplementary file Size Download File type/resource
GSM348297_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348297_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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