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Sample GSM348296 Query DataSets for GSM348296
Status Public on Mar 06, 2009
Title Human_Gorilla_NA15510_Bahati
Sample type genomic
 
Channel 1
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Gorilla_Bahati
Organism Gorilla gorilla
Characteristics DNA from Gorilla Bahati
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_130898CB31074_532
REF_130898CB31074_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy5/Cy3
INV_VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_130898CB31074_532 REF_130898CB31074_635 RATIO EXP_NORM REF_NORM VALUE INV_VALUE
CHR10FS100175400 9.028 8.942 0.086 9.150 8.950 -0.199 0.199
CHR10FS100175700 10.763 11.537 -0.773 10.829 11.535 0.706 -0.706
CHR10FS100176100 11.665 11.848 -0.182 11.710 11.846 0.135 -0.135
CHR10FS100176907 10.101 10.155 -0.054 10.191 10.154 -0.038 0.038
CHR10FS100177007 8.772 9.295 -0.524 8.899 9.300 0.401 -0.401
CHR10FS100177807 10.617 11.294 -0.678 10.689 11.296 0.607 -0.607
CHR10FS100178207 9.745 9.996 -0.251 9.848 9.995 0.147 -0.147
CHR10FS100178507 9.703 10.266 -0.564 9.807 10.265 0.458 -0.458
CHR10FS100179107 9.488 9.802 -0.314 9.598 9.803 0.204 -0.204
CHR10FS100179807 9.423 9.940 -0.517 9.535 9.940 0.405 -0.405
CHR10FS100180100 10.366 10.318 0.048 10.447 10.317 -0.129 0.129
CHR10FS100180700 10.260 10.404 -0.144 10.345 10.406 0.062 -0.062
CHR10FS100181200 9.727 10.173 -0.445 9.831 10.172 0.341 -0.341
CHR10FS100182000 10.458 10.292 0.166 10.534 10.292 -0.243 0.243
CHR10FS100182500 11.220 11.362 -0.141 11.271 11.364 0.093 -0.093
CHR10FS100183100 10.980 11.221 -0.241 11.037 11.223 0.187 -0.187
CHR10FS100183308 10.747 10.904 -0.158 10.813 10.905 0.092 -0.092
CHR10FS100183708 10.775 11.298 -0.524 10.840 11.301 0.46 -0.460
CHR10FS100184308 10.383 10.256 0.127 10.463 10.255 -0.209 0.209
CHR10FS100185008 10.815 11.566 -0.751 10.879 11.563 0.685 -0.685

Total number of rows: 385283

Table truncated, full table size 23737 Kbytes.




Supplementary file Size Download File type/resource
GSM348296_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348296_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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