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Sample GSM348294 Query DataSets for GSM348294
Status Public on Mar 06, 2009
Title Bonobo_Human_LB502_NA15510
Sample type genomic
 
Channel 1
Source name Bonobo_LB502
Organism Pan paniscus
Characteristics DNA from Bonobo LB502
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy3
Label protocol Performed by NimbleGen following company specifications.
 
Channel 2
Source name Human_NA15510
Organism Homo sapiens
Characteristics DNA from Human NA15510
Extracted molecule genomic DNA
Extraction protocol Coriell
Label Cy5
Label protocol Performed by NimbleGen following company specifications.
 
 
Hybridization protocol Performed by NimbleGen following company specifications.
Scan protocol Performed by NimbleGen following company specifications.
Description Performed by NimbleGen following company specifications.
Data processing Normalization was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Dec 06, 2008
Last update date Mar 06, 2009
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL7748
Series (2)
GSE13884 INTER_specific hybs: A Burst of Segmental Duplications in the African Great Ape Ancestor
GSE13934 A Burst of Segmental Duplications in the African Great Ape Ancestor

Data table header descriptions
ID_REF
EXP_130664CB45073_532
REF_130664CB45073_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 Cy3/Cy5

Data table
ID_REF EXP_130664CB45073_532 REF_130664CB45073_635 RATIO EXP_NORM REF_NORM VALUE
CHR10FS100175400 8.942 8.096 0.845 8.878 8.327 0.551
CHR10FS100175700 9.148 8.981 0.167 9.102 9.122 -0.019
CHR10FS100176100 11.124 10.775 0.349 11.096 10.850 0.247
CHR10FS100176907 8.478 7.921 0.557 8.379 8.182 0.197
CHR10FS100177007 8.973 8.478 0.495 8.912 8.665 0.247
CHR10FS100177807 12.276 11.483 0.793 12.214 11.551 0.664
CHR10FS100178207 10.083 9.441 0.642 10.068 9.554 0.514
CHR10FS100178507 10.581 10.184 0.397 10.562 10.267 0.295
CHR10FS100179107 8.444 7.996 0.448 8.342 8.244 0.099
CHR10FS100179807 10.701 10.090 0.611 10.681 10.177 0.504
CHR10FS100180100 10.502 10.374 0.128 10.483 10.452 0.032
CHR10FS100180700 9.483 9.223 0.261 9.454 9.348 0.106
CHR10FS100181200 8.631 8.587 0.045 8.545 8.761 -0.215
CHR10FS100182000 9.535 10.318 -0.783 9.508 10.395 -0.887
CHR10FS100182500 9.720 9.554 0.167 9.698 9.660 0.038
CHR10FS100183100 11.474 11.051 0.422 11.436 11.124 0.313
CHR10FS100183308 9.751 9.473 0.278 9.729 9.584 0.145
CHR10FS100183708 9.936 9.113 0.823 9.920 9.246 0.674
CHR10FS100184308 10.746 9.695 1.052 10.726 9.796 0.930
CHR10FS100185008 11.913 10.993 0.920 11.861 11.066 0.794

Total number of rows: 385283

Table truncated, full table size 20899 Kbytes.




Supplementary file Size Download File type/resource
GSM348294_532.pair.gz 6.3 Mb (ftp)(http) PAIR
GSM348294_635.pair.gz 6.3 Mb (ftp)(http) PAIR
Processed data included within Sample table

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