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GEO accession:
Sample GSM346069
Query DataSets for GSM346069
Status
Public on Jun 29, 2009
Title
NBRC1950-1
Sample type
RNA
Source name
NBRC1950
Organism
Saccharomyces cerevisiae
Characteristics
OD600=1, YPD
Extracted molecule
polyA RNA
Extraction protocol
Each time samples of total RNA were extracted using the hot phenol method. Poly A RNA was enriched from total RNA with Oligotex dT30.
Label
Biotin
Label protocol
According to the Affymetrix user's mannual
Hybridization protocol
At 45degree for 16-18h
Scan protocol
GeneChip scanner
Description
NBRC1950-1
Data processing
GeneChip operating system (GCOS)
Submission date
Nov 26, 2008
Last update date
Jun 29, 2009
Contact name
Jun Shima
Organization name
National Food Research Institute
Lab
Yeast Lab
Street address
2-1-12 Kannondai
City
Tsukuba
State/province
Ibaraki
ZIP/Postal code
305-8642
Country
Japan
Platform ID
GPL2529
Series (1)
GSE13755
Involvement of ergosterol contents in the tolerance to vanillin in Saccharomyces cerevisiae
Data table header descriptions
ID_REF
VALUE
Intensity
ABS_CALL
detection call
DETECTION P-VALUE
p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
159.195
P
0.000389797
AFFX-BioB-M_at
202.961
P
5.16732e-05
AFFX-BioB-3_at
149.846
P
7.00668e-05
AFFX-BioC-5_at
364.108
P
6.02111e-05
AFFX-BioC-3_at
493.895
P
4.42873e-05
AFFX-BioDn-5_at
930.374
P
4.42873e-05
AFFX-BioDn-3_at
2145.33
P
4.42873e-05
AFFX-CreX-5_at
5760.9
P
5.16732e-05
AFFX-CreX-3_at
6864.38
P
4.42873e-05
AFFX-DapX-5_at
3.28138
A
0.514891
AFFX-DapX-M_at
8.29684
A
0.216524
AFFX-DapX-3_at
15.8961
P
0.0200219
AFFX-LysX-5_at
0.183176
A
0.997448
AFFX-LysX-M_at
3.76001
A
0.544587
AFFX-LysX-3_at
8.7062
P
0.0138105
AFFX-PheX-5_at
0.344855
A
0.883887
AFFX-PheX-M_at
5.47338
A
0.58862
AFFX-PheX-3_at
19.4651
A
0.287743
AFFX-ThrX-5_at
7.31608
A
0.5
AFFX-ThrX-M_at
0.332715
A
0.659365
Total number of rows:
10928
Table truncated, full table size
337 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM346069.CEL.gz
1022.1 Kb
(ftp)
(http)
CEL
GSM346069.CHP.gz
57.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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