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GEO accession:
Sample GSM346067
Query DataSets for GSM346067
Status
Public on Jun 29, 2009
Title
X2180-1
Sample type
RNA
Source name
X2180
Organism
Saccharomyces cerevisiae
Characteristics
OD600=1, YPD
Extracted molecule
polyA RNA
Extraction protocol
Each time samples of total RNA were extracted using the hot phenol method. Poly A RNA was enriched from total RNA with Oligotex dT30.
Label
Biotin
Label protocol
According to the Affymetrix user's mannual
Hybridization protocol
At 45degree for 16-18h
Scan protocol
GeneChip scanner
Description
X2180-1
Data processing
GeneChip operating system (GCOS)
Submission date
Nov 26, 2008
Last update date
Jun 29, 2009
Contact name
Jun Shima
Organization name
National Food Research Institute
Lab
Yeast Lab
Street address
2-1-12 Kannondai
City
Tsukuba
State/province
Ibaraki
ZIP/Postal code
305-8642
Country
Japan
Platform ID
GPL2529
Series (1)
GSE13755
Involvement of ergosterol contents in the tolerance to vanillin in Saccharomyces cerevisiae
Data table header descriptions
ID_REF
VALUE
Intensity
ABS_CALL
detection call
DETECTION P-VALUE
p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
126.942
P
0.000296708
AFFX-BioB-M_at
169.017
P
4.42873e-05
AFFX-BioB-3_at
125.263
P
0.000296708
AFFX-BioC-5_at
248.523
P
5.16732e-05
AFFX-BioC-3_at
363.023
P
4.42873e-05
AFFX-BioDn-5_at
603.035
P
4.42873e-05
AFFX-BioDn-3_at
1784.83
P
4.42873e-05
AFFX-CreX-5_at
4471.25
P
4.42873e-05
AFFX-CreX-3_at
5353.61
P
4.42873e-05
AFFX-DapX-5_at
5.5018
A
0.185131
AFFX-DapX-M_at
14.8005
A
0.0676785
AFFX-DapX-3_at
17.5938
P
0.0464816
AFFX-LysX-5_at
1.29756
A
0.772442
AFFX-LysX-M_at
0.941253
A
0.860518
AFFX-LysX-3_at
6.25904
A
0.139482
AFFX-PheX-5_at
0.236463
A
0.973889
AFFX-PheX-M_at
1.12151
A
0.83416
AFFX-PheX-3_at
27.9777
A
0.0894781
AFFX-ThrX-5_at
0.994116
A
0.860518
AFFX-ThrX-M_at
10.6216
A
0.102145
Total number of rows:
10928
Table truncated, full table size
337 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM346067.CEL.gz
1.0 Mb
(ftp)
(http)
CEL
GSM346067.CHP.gz
57.2 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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