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Sample GSM3393934 Query DataSets for GSM3393934
Status Public on Sep 19, 2018
Title genomic DNA from primitive cerebellar tumor 1
Sample type genomic
 
Source name Cerebellar tumor
Organism Homo sapiens
Characteristics gender: Female
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted from frozen tumors using phenol-chloroform procedure
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Infinium MethylationEPIC BeadChip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Cerebellar tumor
Data processing iScan Control Software
 
Submission date Sep 18, 2018
Last update date Sep 19, 2018
Contact name Julien Masliah-Planchon
E-mail(s) julien.masliahplanchon@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75248
Country France
 
Platform ID GPL21145
Series (1)
GSE120122 ETMR-like infantile cerebellar embryonal tumors in the extended morphologic spectrum of DICER1-related tumors

Data table header descriptions
ID_REF
VALUE Average Beta or normalized (provide the normalization method) Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.71932 0.00000
cg00000103 0.90976 0.00000
cg00000109 0.85963 0.00000
cg00000155 0.91962 0.00000
cg00000158 0.94739 0.00000
cg00000165 0.13462 0.00000
cg00000221 0.91278 0.00000
cg00000236 0.82415 0.00000
cg00000289 0.91951 0.00246
cg00000292 0.24739 0.00000
cg00000321 0.80044 0.00000
cg00000363 0.14776 0.00000
cg00000540 0.20085 0.00000
cg00000579 0.39489 0.00000
cg00000596 0.50742 0.00000
cg00000622 0.00364 0.00000
cg00000658 0.80864 0.00000
cg00000714 0.17822 0.00000
cg00000721 0.87481 0.00000
cg00000734 0.06623 0.00000

Total number of rows: 865918

Table truncated, full table size 22828 Kbytes.




Supplementary file Size Download File type/resource
GSM3393934_202250800064_R06C01_Grn.idat.gz 7.1 Mb (ftp)(http) IDAT
GSM3393934_202250800064_R06C01_Red.idat.gz 7.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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