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Sample GSM337650 Query DataSets for GSM337650
Status Public on Nov 14, 2008
Title HCC1143_GHATS_C07
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_C07_160186
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 2.709
CN_473964 2.858
CN_473965 2.593
CN_477984 2.055
CN_473981 4.766
CN_473982 0.927
CN_497980 2.423
CN_497981 0.949
CN_513369 3.997
CN_513370 1.788
CN_517762 1.702
CN_517763 1.179
CN_502615 4.783
CN_502613 1.972
CN_502614 2.029
CN_502616 6.611
CN_502842 3.476
CN_502843 1.448
CN_466171 1.550
CN_466172 3.077

Total number of rows: 1851810

Table truncated, full table size 32802 Kbytes.

Supplementary file Size Download File type/resource
GSM337650.CEL.gz 26.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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