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Sample GSM336012 Query DataSets for GSM336012
Status Public on Mar 01, 2009
Title H1 hES cells
Sample type RNA
 
Source name H1 human ES cells
Organism Homo sapiens
Characteristics H1 human ES cells
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with Trizol.
Label Cy3
Label protocol Performed as described in One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling) Protocol (Agilent, Version 5.7, March 2008).
 
Hybridization protocol Performed as described in One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling) Protocol (Agilent, Version 5.7, March 2008).
Scan protocol Performed as described in One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling) Protocol (Agilent, Version 5.7, March 2008).
Description Effect of p53 in iPS cell generation
Data processing Data were analyzed with GeneSpring GX 7.3.1. The parameters for normalization are as follows:
Data transformation: Set measurement less than 0.01 to 0.01
Per chip: Normalize to 50th percentile
 
Submission date Oct 23, 2008
Last update date Oct 27, 2008
Contact name Shinya Yamanaka
E-mail(s) yamanaka@cira.kyoto-u.ac.jp
Phone 81-75-366-7041
Organization name Center for iPS Cell Research and Applicaton (CiRA), Kyoto University
Street address 53 Kawahara-machi, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL4133
Series (2)
GSE13334 Effect of p53 in human iPS cell generation
GSE13365 Effect of p53 on iPS cell generation

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
1 1.23E+05
2 2.99E+00
3 2.99E+00
4 2.99E+00
5 2.99E+00
6 2.98E+00
7 2.98E+00
8 2.97E+00
9 2.96E+00
10 2.96E+00
11 2.95E+00
12 4.82E+02
13 4.03E+01
14 1.08E+03
15 5.13E+01
16 2.83E+04
17 1.46E+03
18 1.24E+03
19 1.14E+05
20 1.28E+01

Total number of rows: 45015

Table truncated, full table size 648 Kbytes.




Supplementary file Size Download File type/resource
GSM336012.txt.gz 8.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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