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Sample GSM3172801 Query DataSets for GSM3172801
Status Public on Dec 31, 2018
Title colon adenocarcinoma, replicate 2
Sample type RNA
 
Source name COAD tumor
Organism Homo sapiens
Characteristics disease: COAD tumor
Treatment protocol no treatment
Growth protocol no culture
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix WT plus kit
 
Hybridization protocol Clariom D array
Scan protocol Affymetrix Model 450 Fluidics Station and Affymetrix Model 3000 7G
Description Gene expression data from COAD
Data processing Expression Console software (Affymetrix)
 
Submission date Jun 04, 2018
Last update date Dec 31, 2018
Contact name bin zhang
E-mail(s) zhangbin@picb.ac.cn
Phone (65)96100417
Organization name National University of Singapore
Department Cancer Science Institute of Singapore
Street address 14 Medical Drive, #12-01
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL23126
Series (1)
GSE115261 Expression data of colon adenocarcinoma and normal colon

Data table header descriptions
ID_REF
VALUE log2-sst-rma-gene-full

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 8.17066
AFFX-BkGr-GC04_st 6.56753
AFFX-BkGr-GC05_st 6.43218
AFFX-BkGr-GC06_st 6.00914
AFFX-BkGr-GC07_st 5.21506
AFFX-BkGr-GC08_st 4.61851
AFFX-BkGr-GC09_st 4.06155
AFFX-BkGr-GC10_st 3.68546
AFFX-BkGr-GC11_st 3.39049
AFFX-BkGr-GC12_st 3.17323
AFFX-BkGr-GC13_st 2.85313
AFFX-BkGr-GC14_st 2.64743
AFFX-BkGr-GC15_st 2.54281
AFFX-BkGr-GC16_st 2.57821
AFFX-BkGr-GC17_st 2.5258
AFFX-BkGr-GC18_st 2.60554
AFFX-BkGr-GC19_st 2.74741
AFFX-BkGr-GC20_st 2.79084
AFFX-BkGr-GC21_st 2.84368
AFFX-BkGr-GC22_st 3.22378

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3172801_T2_Clariom_D_Human_.CEL.gz 22.4 Mb (ftp)(http) CEL
GSM3172801_T2_Clariom_D_Human_.sst-rma-gene-full.chp.gz 887.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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