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Sample GSM3110590 Query DataSets for GSM3110590
Status Public on Apr 26, 2018
Title BJAB treated by APRIL replicate 2
Sample type RNA
 
Source name BJAB treated by APRIL
Organism Homo sapiens
Characteristics cell line: BJAB
cell type: B Lymphoma cell line
treated with: recombinant purified APRIL (1µg/ml) for 6hrs
Treatment protocol BJAB and HBL-1 cell lines were stimulated for 6 hours with recombinant purified APRIL (1µg/ml) or with EDA (1µg/ml) as control.
Growth protocol BJAB and HBL-1 cell lines were cultured in RPMI1640 medium and 10% FCS.
Extracted molecule total RNA
Extraction protocol Total RNAs were purified from cells with the RNeasy Qiagen purification kit following manufacturer's instructions including an on-column DNase I treatment step to remove any residual contaminant DNA.
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description BH8
RNA expression data from BJAB treated by APRIL
Data processing Data obtained for the whole set of samples were normalized by RMA.
affymetrix-algorithm-name = sst-rma-gene-full
affymetrix-algorithm-version = 1.0
program-name = Expression Console
program-version = 1.4.1.46
 
Submission date Apr 25, 2018
Last update date Apr 26, 2018
Contact name Jerome Moreaux
E-mail(s) jerome.moreaux@igh.cnrs.fr
Organization name CHRU Montpellier
Department Biological Hematology
Lab Laboratory for Monitoring Innovative Therapies
Street address 80 Av. Augustin Fliche
City Montpellier
ZIP/Postal code 34295
Country France
 
Platform ID GPL23126
Series (1)
GSE113643 Coreceptor delivery of paracrine APRIL to Golgic BCMA lowers immunogenicity of B-cell lymphoma

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 9.64526
AFFX-BkGr-GC04_st 7.92499
AFFX-BkGr-GC05_st 6.96166
AFFX-BkGr-GC06_st 6.35439
AFFX-BkGr-GC07_st 5.81421
AFFX-BkGr-GC08_st 5.17953
AFFX-BkGr-GC09_st 4.69468
AFFX-BkGr-GC10_st 4.25335
AFFX-BkGr-GC11_st 3.84571
AFFX-BkGr-GC12_st 3.48492
AFFX-BkGr-GC13_st 3.02105
AFFX-BkGr-GC14_st 2.80057
AFFX-BkGr-GC15_st 2.67211
AFFX-BkGr-GC16_st 2.68758
AFFX-BkGr-GC17_st 2.65442
AFFX-BkGr-GC18_st 2.67983
AFFX-BkGr-GC19_st 2.85361
AFFX-BkGr-GC20_st 2.88744
AFFX-BkGr-GC21_st 3.06852
AFFX-BkGr-GC22_st 3.57454

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3110590_BH8.CEL.gz 25.8 Mb (ftp)(http) CEL
GSM3110590_BH8_Clariom_D_Human_.sst-rma-gene-full.chp.gz 888.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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