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Sample GSM3025147 Query DataSets for GSM3025147
Status Public on Mar 08, 2018
Title MFS_25T
Sample type genomic
 
Source name Tumor tissue 25
Organism Homo sapiens
Characteristics gender: Female
tissue: Myxofibrosarcoma
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted from fresh-frozen tissues tissues using the standard phenol-chloroform methodDNA was extracted from fresh-frozen tissues or FFPE tissues using the standard phenol-chloroform genomic DNA was extracted from fresh-frozen tissues or FFPE tissues using the standard phenol-chloroform method.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol The array was scanned with an iScan System
Description SAMPLE 14
Data processing The data were analyzed using GenomeStudio Methylation Module Softwarev.1.9.0
 
Submission date Feb 27, 2018
Last update date Mar 08, 2018
Contact name Koichi Ogura
E-mail(s) ogura-tky@umin.ac.jp
Organization name National Cancer Center
Street address 5-1-1 Tsukiji, Chuo-ku
City Tokyo
ZIP/Postal code 104-0045
Country Japan
 
Platform ID GPL13534
Series (1)
GSE111200 Integrated genetic and epigenetic analysis of myxofibrosarcoma

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.1412924 0
cg00000108 0.9276769 0
cg00000109 0.903087 0
cg00000165 0.09413647 0
cg00000236 0.8227736 0
cg00000289 0.6510372 0
cg00000292 0.4428209 0
cg00000321 0.571211 0
cg00000363 0.134719 0
cg00000622 0.008838288 0
cg00000658 0.8059203 0
cg00000714 0.06491093 0
cg00000721 0.9031544 0
cg00000734 0.05885102 0
cg00000769 0.03705878 0
cg00000807 0.7507834 0
cg00000884 0.7933283 0
cg00000905 0.05156027 0
cg00000924 0.2117254 0
cg00000948 0.8765069 0

Total number of rows: 485577

Table truncated, full table size 11015 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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