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Sample GSM3025139 Query DataSets for GSM3025139
Status Public on Mar 08, 2018
Title MFS_07T
Sample type genomic
 
Source name Tumor tissue 07
Organism Homo sapiens
Characteristics gender: male
tissue: Myxofibrosarcoma
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted from fresh-frozen tissues tissues using the standard phenol-chloroform methodDNA was extracted from fresh-frozen tissues or FFPE tissues using the standard phenol-chloroform genomic DNA was extracted from fresh-frozen tissues or FFPE tissues using the standard phenol-chloroform method.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol The array was scanned with an iScan System
Description SAMPLE 6
Data processing The data were analyzed using GenomeStudio Methylation Module Softwarev.1.9.0
 
Submission date Feb 27, 2018
Last update date Mar 08, 2018
Contact name Koichi Ogura
E-mail(s) ogura-tky@umin.ac.jp
Organization name National Cancer Center
Street address 5-1-1 Tsukiji, Chuo-ku
City Tokyo
ZIP/Postal code 104-0045
Country Japan
 
Platform ID GPL13534
Series (1)
GSE111200 Integrated genetic and epigenetic analysis of myxofibrosarcoma

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.3216082 0
cg00000108 0.9054971 0
cg00000109 0.8429325 0
cg00000165 0.3586302 0
cg00000236 0.8233001 0
cg00000289 0.675427 0
cg00000292 0.5571056 0
cg00000321 0.1971944 0
cg00000363 0.4230012 0
cg00000622 0.01309674 0
cg00000658 0.8141561 0
cg00000714 0.1692839 0
cg00000721 0.9079517 0
cg00000734 0.06230491 0
cg00000769 0.05365777 0
cg00000807 0.7674077 0
cg00000884 0.714479 0
cg00000905 0.05702686 0
cg00000924 0.3676083 0
cg00000948 0.8967282 0

Total number of rows: 485577

Table truncated, full table size 10990 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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