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Sample GSM297565 Query DataSets for GSM297565
Status Public on May 18, 2009
Title A. niger Glucose pH 6.0 rep 3
Sample type RNA
 
Source name A. niger mycelium grown on a glucose medium at pH 6
Organism Aspergillus niger
Characteristics Dispersed liquid culture grown at pH 6.0
Extracted molecule total RNA
Extraction protocol Affymetrix standard
Label Affymetrix standard
Label protocol Affymetrix standard
 
Hybridization protocol Affymetrix standard
Scan protocol Affymetrix standard
Description Part of a study of the response to three levels of ambient pH.
Data processing Data processed with R 2.5.1 according to the protocol of Andersen MR, Vongsangnak W, Panagiotou G, Salazar MP, Lehmann L, Nielsen J. Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4387-92. PMID: 18332432
 
Submission date Jun 09, 2008
Last update date May 18, 2009
Contact name Mikael R Andersen
E-mail(s) mr@bio.dtu.dk
Organization name Technical University of Denmark
Department BioCentrum-DTU
Lab Center for Microbial Biotechnology
Street address Søltofts plads, bygn 223
City Kgs. Lyngby
ZIP/Postal code 2800
Country Denmark
 
Platform ID GPL5975
Series (1)
GSE11725 Study of the response of Aspergillus niger to three levels of ambient pH

Data table header descriptions
ID_REF
VALUE RMA normalized and log2-transformed expression value indexes

Data table
ID_REF VALUE
JGI118581_at 5.399087876
JGI118598_at 5.314842729
JGI118599_at 6.863533339
JGI118601_at 6.542713373
JGI118617_at 5.198280164
JGI118624_at 8.910076257
JGI118629_at 6.297680072
JGI118635_at 6.663358111
JGI118644_at 6.893504212
JGI118659_at 6.576204518
JGI118662_at 5.059284222
JGI118666_at 6.747490347
JGI118704_at 9.86798007
JGI118744_at 7.163595114
JGI118750_at 6.575339782
JGI118758_at 6.861322262
JGI118832_at 9.036124755
JGI118837_at 5.838101473
JGI118881_at 7.864447035
JGI118888_at 8.19032248

Total number of rows: 11122

Table truncated, full table size 265 Kbytes.




Supplementary file Size Download File type/resource
GSM297565.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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