NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM296860 Query DataSets for GSM296860
Status Public on Jul 01, 2008
Title Day5 VIN13 #2
Sample type RNA
 
Source name Day5 VIN13
Organism Saccharomyces cerevisiae
Characteristics strain: VIN13
replicate: 2
time: Day 5 of fermentation
Extracted molecule total RNA
Extraction protocol Hot-phenol method
Label Biotin
Label protocol Standard Affymetrix procedure
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description N/A
Data processing Standard Affymetrix Procedure, MAS5.0
 
Submission date Jun 05, 2008
Last update date Aug 04, 2010
Contact name Debra Rossouw
E-mail(s) debra@sun.ac.za
Organization name University of Stellenbosch
Department Institute for Wine Biotechnology
Lab Yeast
Street address Cnr Neethling and Victoria rd
City Stellenbosch
State/province Western Cape
ZIP/Postal code 7600
Country South Africa
 
Platform ID GPL2529
Series (1)
GSE11651 Transcriptomic profiling of five industrial wine yeast strains at three time points during allcoholic fermentation

Data table header descriptions
ID_REF
VALUE Relative gene expression intensity
ABS_CALL Transcript present or absent call
DETECTION P-VALUE p-value for detection of transcript

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 118.836 P 8.14279e-05
AFFX-BioB-M_at 175.419 P 4.42873e-05
AFFX-BioB-3_at 130.048 P 7.00668e-05
AFFX-BioC-5_at 94.7546 P 7.00668e-05
AFFX-BioC-3_at 103.437 P 7.00668e-05
AFFX-BioDn-5_at 765.705 P 4.42873e-05
AFFX-BioDn-3_at 1742.26 P 4.42873e-05
AFFX-CreX-5_at 4024.54 P 5.16732e-05
AFFX-CreX-3_at 4267.4 P 4.42873e-05
AFFX-DapX-5_at 195.142 P 4.42873e-05
AFFX-DapX-M_at 451.911 P 6.02111e-05
AFFX-DapX-3_at 613.402 P 4.42873e-05
AFFX-LysX-5_at 27.2164 P 0.000509415
AFFX-LysX-M_at 51.9134 P 0.000296708
AFFX-LysX-3_at 121.501 P 4.42873e-05
AFFX-PheX-5_at 34.3627 P 4.42873e-05
AFFX-PheX-M_at 46.6059 P 9.4506e-05
AFFX-PheX-3_at 73.3734 P 5.16732e-05
AFFX-ThrX-5_at 29.6193 P 0.00010954
AFFX-ThrX-M_at 69.0672 P 4.42873e-05

Total number of rows: 10928

Table truncated, full table size 338 Kbytes.




Supplementary file Size Download File type/resource
GSM296860.CEL.gz 1.1 Mb (ftp)(http) CEL
GSM296860.CHP.gz 56.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap