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Sample GSM2948035 Query DataSets for GSM2948035
Status Public on Nov 30, 2018
Title Muscle_pre_9
Sample type RNA
 
Source name vastus lateralis muscle, before HIIT
Organism Homo sapiens
Characteristics tissue: vastus lateralis muscle
gender: male
time point: pre
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from muscle biopsy samples using the miRNeasy® Mini Kit (Qiagen, Hilden, Germany) accoding to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cDNA were prepared using GeneChip® WT PLUS Reagent Kit according to the GeneChipR WT PLUS Reagent Kit User Manual from 500 ng total RNA.
 
Hybridization protocol Following fragmentation, 3.5 ug of cDNA were hybridized for 16 hr at 45C on the Human Gene 2.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneChip® Scanner 3000 7G according to the Affymetrix® GeneChip® Command Console® User Manual.
Data processing The data were analyzed with Affymetrix® Expression Console™ Software and RMA normalization was conducted.
 
Submission date Jan 25, 2018
Last update date Nov 30, 2018
Contact name Eri Miyamoto-Mikami
Organization name National Institute of Fitness and Sports in Kanoya
Department Department of Sports and Life Science
Street address 1 Shiromizu
City Kanoya
State/province Kagoshima
ZIP/Postal code 891-2393
Country Japan
 
Platform ID GPL16686
Series (1)
GSE109657 Skeletal muscle response to high-intensity intermittent exercise training in young men

Data table header descriptions
ID_REF
VALUE Normalized each expression value was divided by the median expression value of all samples for each probe and log2-transformed.

Data table
ID_REF VALUE
16657436 -0.161154603
16657440 -0.235904329
16657445 -0.019145776
16657447 -0.002339866
16657450 -0.047128955
16657469 -0.138157956
16657473 -0.38738325
16657476 -0.007074494
16657480 -0.227327362
16657485 -0.146219432
16657489 0.409937023
16657492 0.097816365
16657502 0.061283488
16657506 -0.146284581
16657509 -0.061094739
16657514 -0.04019538
16657527 -0.209246508
16657529 -0.06425649
16657534 -0.011176893
16657554 0.024896279

Total number of rows: 53617

Table truncated, full table size 1120 Kbytes.




Supplementary file Size Download File type/resource
GSM2948035_PRE_9.CEL.gz 7.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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