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Sample GSM291142 Query DataSets for GSM291142
Status Public on Jul 01, 2008
Title Day5 285 #3
Sample type RNA
 
Source name Day5 285
Organism Saccharomyces cerevisiae
Characteristics strain: 285
replicate: 3
time: Day 5 of fermentation
Extracted molecule total RNA
Extraction protocol Hot-Phenol method
Label Biotin
Label protocol Standard Affymetrix Procedure
 
Hybridization protocol Standard Affymetrix Procedure
Scan protocol Standard Affymetrix Procedure
Description Standard Affymetrix Procedure
Data processing Standard Affymetrix Procedure, MAS5.0
 
Submission date May 26, 2008
Last update date Aug 04, 2010
Contact name Debra Rossouw
E-mail(s) debra@sun.ac.za
Organization name University of Stellenbosch
Department Institute for Wine Biotechnology
Lab Yeast
Street address Cnr Neethling and Victoria rd
City Stellenbosch
State/province Western Cape
ZIP/Postal code 7600
Country South Africa
 
Platform ID GPL2529
Series (1)
GSE11651 Transcriptomic profiling of five industrial wine yeast strains at three time points during allcoholic fermentation

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 152.23 P 5.16732e-05
AFFX-BioB-M_at 215.614 P 4.42873e-05
AFFX-BioB-3_at 155.113 P 5.16732e-05
AFFX-BioC-5_at 337.2 P 5.16732e-05
AFFX-BioC-3_at 448.843 P 4.42873e-05
AFFX-BioDn-5_at 1136.62 P 4.42873e-05
AFFX-BioDn-3_at 2169.58 P 4.42873e-05
AFFX-CreX-5_at 5923.72 P 5.16732e-05
AFFX-CreX-3_at 5461.61 P 4.42873e-05
AFFX-DapX-5_at 93.0149 P 5.16732e-05
AFFX-DapX-M_at 237.617 P 8.14279e-05
AFFX-DapX-3_at 314.935 P 4.42873e-05
AFFX-LysX-5_at 12.0731 P 0.00499819
AFFX-LysX-M_at 22.8703 P 0.00159257
AFFX-LysX-3_at 75.4498 P 0.000109401
AFFX-PheX-5_at 23.0217 P 0.00010954
AFFX-PheX-M_at 39.0485 P 0.00159257
AFFX-PheX-3_at 41.8643 P 6.99729e-05
AFFX-ThrX-5_at 17.9925 P 0.00227496
AFFX-ThrX-M_at 35.883 P 5.16732e-05

Total number of rows: 10928

Table truncated, full table size 338 Kbytes.




Supplementary file Size Download File type/resource
GSM291142.CEL.gz 1019.8 Kb (ftp)(http) CEL
GSM291142.CHP.gz 57.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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