NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM291115 Query DataSets for GSM291115
Status Public on Jul 01, 2008
Title Day2 285 #1
Sample type RNA
 
Source name Day2 285
Organism Saccharomyces cerevisiae
Characteristics strain: 285
replicate: 1
time: Day 2 of fermentation
Extracted molecule total RNA
Extraction protocol Hot-Phenol method
Label Biotin
Label protocol Standard Affymetrix Procedure
 
Hybridization protocol Standard Affymetrix Procedure
Scan protocol Standard Affymetrix Procedure
Description Standard Affymetrix Procedure
Data processing Standard Affymetrix Procedure, MAS5.0
 
Submission date May 26, 2008
Last update date Aug 04, 2010
Contact name Debra Rossouw
E-mail(s) debra@sun.ac.za
Organization name University of Stellenbosch
Department Institute for Wine Biotechnology
Lab Yeast
Street address Cnr Neethling and Victoria rd
City Stellenbosch
State/province Western Cape
ZIP/Postal code 7600
Country South Africa
 
Platform ID GPL2529
Series (1)
GSE11651 Transcriptomic profiling of five industrial wine yeast strains at three time points during allcoholic fermentation

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 179.645 P 5.16732e-05
AFFX-BioB-M_at 256.756 P 4.42873e-05
AFFX-BioB-3_at 165.891 P 4.42873e-05
AFFX-BioC-5_at 360.04 P 4.42873e-05
AFFX-BioC-3_at 529.997 P 4.42873e-05
AFFX-BioDn-5_at 1266.63 P 4.42873e-05
AFFX-BioDn-3_at 2488.21 P 4.42873e-05
AFFX-CreX-5_at 6128.11 P 5.16732e-05
AFFX-CreX-3_at 6517.21 P 4.42873e-05
AFFX-DapX-5_at 58.6112 P 8.14279e-05
AFFX-DapX-M_at 157.273 P 0.000169227
AFFX-DapX-3_at 319.948 P 6.02111e-05
AFFX-LysX-5_at 16.0364 P 0.00179591
AFFX-LysX-M_at 21.2725 P 0.0151826
AFFX-LysX-3_at 81.8043 P 6.02111e-05
AFFX-PheX-5_at 15.5773 P 0.000296708
AFFX-PheX-M_at 31.3807 P 0.0012475
AFFX-PheX-3_at 51.83 P 0.00010954
AFFX-ThrX-5_at 7.68444 M 0.0629293
AFFX-ThrX-M_at 23.5787 P 0.000389797

Total number of rows: 10928

Table truncated, full table size 338 Kbytes.




Supplementary file Size Download File type/resource
GSM291115.CEL.gz 1008.1 Kb (ftp)(http) CEL
GSM291115.CHP.gz 57.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap