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Sample GSM290990 Query DataSets for GSM290990
Status Public on Jul 01, 2008
Title Day2 DV10 #2
Sample type RNA
 
Source name Day2 DV10
Organism Saccharomyces cerevisiae
Characteristics strain: DV10
replicate: 2
time: Day 2 of fermentation
Extracted molecule total RNA
Extraction protocol Hot Phenol Method
Label Biotin
Label protocol Standard Affymetrix Procedure
 
Hybridization protocol Standard Affymetrix Procedure
Scan protocol Standard Affymetrix Procedure
Description N/A
Data processing Standard Affymetrix Procedure, MAS5.0
 
Submission date May 24, 2008
Last update date Aug 04, 2010
Contact name Debra Rossouw
E-mail(s) debra@sun.ac.za
Organization name University of Stellenbosch
Department Institute for Wine Biotechnology
Lab Yeast
Street address Cnr Neethling and Victoria rd
City Stellenbosch
State/province Western Cape
ZIP/Postal code 7600
Country South Africa
 
Platform ID GPL2529
Series (1)
GSE11651 Transcriptomic profiling of five industrial wine yeast strains at three time points during allcoholic fermentation

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 311.72 P 4.42873e-05
AFFX-BioB-M_at 451.334 P 4.42873e-05
AFFX-BioB-3_at 286.303 P 4.42873e-05
AFFX-BioC-5_at 747.139 P 4.42873e-05
AFFX-BioC-3_at 894.872 P 4.42873e-05
AFFX-BioDn-5_at 2142.7 P 4.42873e-05
AFFX-BioDn-3_at 3809.98 P 4.42873e-05
AFFX-CreX-5_at 10235.7 P 5.16732e-05
AFFX-CreX-3_at 10236.7 P 4.42873e-05
AFFX-DapX-5_at 557.131 P 4.42873e-05
AFFX-DapX-M_at 1247.79 P 4.42873e-05
AFFX-DapX-3_at 2300.45 P 4.42873e-05
AFFX-LysX-5_at 116.357 P 5.16732e-05
AFFX-LysX-M_at 145.984 P 9.4506e-05
AFFX-LysX-3_at 456.658 P 5.16732e-05
AFFX-PheX-5_at 115.049 P 4.42873e-05
AFFX-PheX-M_at 188.663 P 4.42873e-05
AFFX-PheX-3_at 241.131 P 4.42873e-05
AFFX-ThrX-5_at 75.4539 P 0.00010954
AFFX-ThrX-M_at 218.81 P 4.42873e-05

Total number of rows: 10928

Table truncated, full table size 338 Kbytes.




Supplementary file Size Download File type/resource
GSM290990.CEL.gz 959.9 Kb (ftp)(http) CEL
GSM290990.CHP.gz 57.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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