|
| Status |
Public on Jan 25, 2018 |
| Title |
ser_3 |
| Sample type |
SRA |
| |
|
| Source name |
Adult mouse brainstem, raphe nuclei
|
| Organism |
Mus musculus |
| Characteristics |
strain: SERT-cre-Rpl10a-mCherry
cell type: SER
biological replicate: 3
batch: I
|
| Extracted molecule |
total RNA |
| Extraction protocol |
FACS
smart-seq2
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
SER_3
|
| Data processing |
Reads were mapped to the mm10 mouse genome using STAR v 2.4.1c with default settings
Reads per gene was computed using rpkmforgenes.py with default settings and NCBI RefSeq annotation with addition of the mCherry cDNA sequence
Genome_build: mm10
Supplementary_files_format_and_content: one .csv file containing mapped reads per gene for 10 libraries
|
| |
|
| Submission date |
Dec 04, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Markus Ringner |
| E-mail(s) |
markus.ringner@scilifelab.se
|
| Organization name |
Lund University
|
| Street address |
Sölvegatan 35
|
| City |
Lund |
| ZIP/Postal code |
22362 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE107655 |
A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons [RNA-Seq] |
| GSE107656 |
A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons |
|
| Relations |
| BioSample |
SAMN08128588 |
| SRA |
SRX3441922 |
