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GEO accession:
Sample GSM280374
Query DataSets for GSM280374
Status
Public on Apr 03, 2009
Title
Pre Vac Patient 4
Sample type
RNA
Source name
Pre Vaccination tumor
Organism
Homo sapiens
Characteristics
Pre Vaccination tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 08, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2428.4
P
0.000857
AFFX-BioB-M_at
3757.3
P
0.000754
AFFX-BioB-3_at
1763
P
0.033677
AFFX-BioC-5_at
6665.7
P
0.00007
AFFX-BioC-3_at
5442
P
0.000044
AFFX-BioDn-5_at
7181.7
P
0.00006
AFFX-BioDn-3_at
40982.6
P
0.000081
AFFX-CreX-5_at
80141.1
P
0.000044
AFFX-CreX-3_at
88779.7
P
0.000044
AFFX-DapX-5_at
470.6
P
0.046482
AFFX-DapX-M_at
254.4
A
0.51489
AFFX-DapX-3_at
185.8
A
0.58862
AFFX-LysX-5_at
325.1
A
0.287743
AFFX-LysX-M_at
418.7
A
0.382599
AFFX-LysX-3_at
254.8
A
0.139482
AFFX-PheX-5_at
23.5
A
0.794268
AFFX-PheX-M_at
62.3
A
0.794268
AFFX-PheX-3_at
221.4
A
0.712257
AFFX-ThrX-5_at
382.7
A
0.250796
AFFX-ThrX-M_at
39.9
A
0.883887
Total number of rows:
54675
Table truncated, full table size
1489 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM280374.CEL.gz
5.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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