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GEO accession:
Sample GSM280373
Query DataSets for GSM280373
Status
Public on Apr 03, 2009
Title
Post Vac Patient 4
Sample type
RNA
Source name
Post Vaccination tumor
Organism
Homo sapiens
Characteristics
Post Vaccination tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 08, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
3079.1
P
0.000857
AFFX-BioB-M_at
4079.5
P
0.000297
AFFX-BioB-3_at
2204.3
P
0.00844
AFFX-BioC-5_at
6553.5
P
0.00011
AFFX-BioC-3_at
6288.2
P
0.000052
AFFX-BioDn-5_at
9347.4
P
0.00006
AFFX-BioDn-3_at
46039.9
P
0.000052
AFFX-CreX-5_at
93152.1
P
0.000044
AFFX-CreX-3_at
114049.3
P
0.000044
AFFX-DapX-5_at
169.1
A
0.102165
AFFX-DapX-M_at
36.6
A
0.794268
AFFX-DapX-3_at
59.6
A
0.760937
AFFX-LysX-5_at
301.6
A
0.131361
AFFX-LysX-M_at
329.1
A
0.425962
AFFX-LysX-3_at
164.1
A
0.175328
AFFX-PheX-5_at
17.3
A
0.9273
AFFX-PheX-M_at
22.3
A
0.957038
AFFX-PheX-3_at
249.3
A
0.645547
AFFX-ThrX-5_at
172.6
A
0.354453
AFFX-ThrX-M_at
69.7
A
0.749204
Total number of rows:
54675
Table truncated, full table size
1487 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM280373.CEL.gz
5.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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