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GEO accession:
Sample GSM280371
Query DataSets for GSM280371
Status
Public on Apr 03, 2009
Title
Pre Vac Patient 3
Sample type
RNA
Source name
Pre Vaccination tumor
Organism
Homo sapiens
Characteristics
Pre Vaccination tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 08, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
3754.4
P
0.000581
AFFX-BioB-M_at
6211.2
P
0.000044
AFFX-BioB-3_at
2236.1
P
0.00034
AFFX-BioC-5_at
9328
P
0.000081
AFFX-BioC-3_at
8353.4
P
0.000044
AFFX-BioDn-5_at
12030.5
P
0.000044
AFFX-BioDn-3_at
57987.4
P
0.00007
AFFX-CreX-5_at
113652.7
P
0.000052
AFFX-CreX-3_at
126692.8
P
0.000044
AFFX-DapX-5_at
122.8
A
0.368438
AFFX-DapX-M_at
128.4
A
0.60308
AFFX-DapX-3_at
131
A
0.659339
AFFX-LysX-5_at
46.5
A
0.382599
AFFX-LysX-M_at
268.4
A
0.340661
AFFX-LysX-3_at
84.8
A
0.39692
AFFX-PheX-5_at
217.2
A
0.39692
AFFX-PheX-M_at
22.1
A
0.963431
AFFX-PheX-3_at
124.4
A
0.659339
AFFX-ThrX-5_at
373.6
A
0.262827
AFFX-ThrX-M_at
25.3
A
0.852061
Total number of rows:
54675
Table truncated, full table size
1485 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM280371.CEL.gz
5.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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