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GEO accession:
Sample GSM280370
Query DataSets for GSM280370
Status
Public on Apr 03, 2009
Title
Post Vac Patient 5
Sample type
RNA
Source name
Post Vaccination tumor
Organism
Homo sapiens
Characteristics
Post Vaccination tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 08, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2829.3
P
0.000754
AFFX-BioB-M_at
4365.2
P
0.00039
AFFX-BioB-3_at
1385
P
0.036569
AFFX-BioC-5_at
7619.3
P
0.000052
AFFX-BioC-3_at
7563
P
0.000044
AFFX-BioDn-5_at
7616.3
P
0.000052
AFFX-BioDn-3_at
46033.7
P
0.000044
AFFX-CreX-5_at
89752.8
P
0.000052
AFFX-CreX-3_at
106591.4
P
0.000044
AFFX-DapX-5_at
249.8
A
0.227636
AFFX-DapX-M_at
356.7
A
0.368438
AFFX-DapX-3_at
54.1
A
0.868639
AFFX-LysX-5_at
217.7
A
0.216524
AFFX-LysX-M_at
244.1
A
0.58862
AFFX-LysX-3_at
193.2
A
0.250796
AFFX-PheX-5_at
33.8
A
0.910522
AFFX-PheX-M_at
16.9
A
0.976071
AFFX-PheX-3_at
395.9
A
0.368438
AFFX-ThrX-5_at
31.8
A
0.971554
AFFX-ThrX-M_at
40.4
A
0.749204
Total number of rows:
54675
Table truncated, full table size
1486 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM280370.CEL.gz
7.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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