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GEO accession:
Sample GSM280360
Query DataSets for GSM280360
Status
Public on Apr 03, 2009
Title
Pre Ctrl 2
Sample type
RNA
Source name
Pre Vaccination Control Non Vaccinated tumor
Organism
Homo sapiens
Characteristics
Pre Vaccination Control Non Vaccinated tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 08, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2298.1
P
0.003212
AFFX-BioB-M_at
2607.6
P
0.020022
AFFX-BioB-3_at
845
A
0.313723
AFFX-BioC-5_at
4896.8
P
0.00039
AFFX-BioC-3_at
4755.6
P
0.000044
AFFX-BioDn-5_at
9841.2
P
0.00007
AFFX-BioDn-3_at
33912.7
P
0.000297
AFFX-CreX-5_at
69555.8
P
0.000052
AFFX-CreX-3_at
84252.7
P
0.000044
AFFX-DapX-5_at
467.3
A
0.078002
AFFX-DapX-M_at
360.9
A
0.48511
AFFX-DapX-3_at
72.6
A
0.672921
AFFX-LysX-5_at
388.1
M
0.050229
AFFX-LysX-M_at
492.8
A
0.368438
AFFX-LysX-3_at
305
A
0.205732
AFFX-PheX-5_at
194.5
A
0.455413
AFFX-PheX-M_at
58.5
A
0.891021
AFFX-PheX-3_at
195.3
A
0.749204
AFFX-ThrX-5_at
331.9
A
0.470241
AFFX-ThrX-M_at
63.7
A
0.814869
Total number of rows:
54675
Table truncated, full table size
1491 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM280360.CEL.gz
5.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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