GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM280297
Query DataSets for GSM280297
Status
Public on Apr 03, 2009
Title
Pre Ctrl 1
Sample type
RNA
Source name
Pre Vaccination Control Non Vaccinated tumor
Organism
Homo sapiens
Characteristics
Pre Vaccination Control Non Vaccinated tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 08, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1374
P
0.000857
AFFX-BioB-M_at
2170.2
P
0.00039
AFFX-BioB-3_at
883.3
P
0.033677
AFFX-BioC-5_at
4321.5
P
0.00007
AFFX-BioC-3_at
5053.5
P
0.000044
AFFX-BioDn-5_at
7368.3
P
0.000044
AFFX-BioDn-3_at
25345.2
P
0.000095
AFFX-CreX-5_at
60376.4
P
0.000052
AFFX-CreX-3_at
68366
P
0.000044
AFFX-DapX-5_at
146.8
A
0.131361
AFFX-DapX-M_at
83.7
A
0.645547
AFFX-DapX-3_at
35.5
A
0.617401
AFFX-LysX-5_at
147.2
A
0.275146
AFFX-LysX-M_at
121.6
A
0.659339
AFFX-LysX-3_at
30.6
A
0.544587
AFFX-PheX-5_at
24
A
0.883887
AFFX-PheX-M_at
12.4
A
0.876428
AFFX-PheX-3_at
125.2
A
0.51489
AFFX-ThrX-5_at
149.4
A
0.617401
AFFX-ThrX-M_at
127.3
A
0.368438
Total number of rows:
54675
Table truncated, full table size
1481 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM280297.CEL.gz
5.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
