|
| Status |
Public on Sep 29, 2017 |
| Title |
Cordblood_lowpregnancyanxiety_PELS_18 |
| Sample type |
genomic |
| |
|
| Source name |
Cordblood_low pregnancy anxiety
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
pregnancy anxiety: low pregnancy anxiety
tissue: cord blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Cord blood DNA isolation
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard HM450 BeadChip protocol on bisulfite treated DNA
|
| |
|
| Hybridization protocol |
Standard HM450 BeadChip protocol on bisulfite treated DNA
|
| Scan protocol |
Standard HM450 BeadChip protocol on bisulfite treated DNA
|
| Data processing |
Raw data quality control and normalization were implemented using the wateRmelon package in R (Bioconductor). Probes with a detection p-value of more than 0.01 or a bead count of less than 3 in more than 5% of samples were removed. Additionally, cross-hybridizing probes, SNP probes and probes on the X or Y chromosomes were removed.
The singal_intensities.txt contains unmethylated and methylated signal intensities.
|
| |
|
| Submission date |
Sep 28, 2017 |
| Last update date |
Jan 23, 2018 |
| Contact name |
Stephan Claes |
| Organization name |
KU Leuven
|
| Department |
Department of Neurosciences
|
| Lab |
Research Group Psychiatry
|
| Street address |
Herestraat 49
|
| City |
Leuven |
| ZIP/Postal code |
3000 |
| Country |
Belgium |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
|
