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GEO accession:
Sample GSM279184
Query DataSets for GSM279184
Status
Public on Apr 03, 2009
Title
Pre Vac Patient 6
Sample type
RNA
Source name
Pre Vaccination tumor
Organism
Homo sapiens
Characteristics
Pre Vaccination tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 03, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2218.2
P
0.001102
AFFX-BioB-M_at
3342.1
P
0.000754
AFFX-BioB-3_at
1800.7
M
0.058444
AFFX-BioC-5_at
5674.7
P
0.000225
AFFX-BioC-3_at
5970.2
P
0.000127
AFFX-BioDn-5_at
7203.2
P
0.000081
AFFX-BioDn-3_at
33094.4
P
0.000081
AFFX-CreX-5_at
70799.8
P
0.000052
AFFX-CreX-3_at
83424
P
0.000044
AFFX-DapX-5_at
195.1
A
0.131361
AFFX-DapX-M_at
191.3
A
0.52976
AFFX-DapX-3_at
44.3
A
0.945787
AFFX-LysX-5_at
190.2
A
0.195266
AFFX-LysX-M_at
323.6
A
0.327079
AFFX-LysX-3_at
166
P
0.039661
AFFX-PheX-5_at
55.4
A
0.712257
AFFX-PheX-M_at
38.7
A
0.824672
AFFX-PheX-3_at
177.3
A
0.724854
AFFX-ThrX-5_at
173.4
A
0.368438
AFFX-ThrX-M_at
146.8
A
0.60308
Total number of rows:
54675
Table truncated, full table size
1487 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM279184.CEL.gz
5.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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