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Sample GSM279184 Query DataSets for GSM279184
Status Public on Apr 03, 2009
Title Pre Vac Patient 6
Sample type RNA
 
Source name Pre Vaccination tumor
Organism Homo sapiens
Characteristics Pre Vaccination tumor
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label biotin
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description RNA from frozen Glioblastoma Multiforme tumor
Data processing MAS5 Normalized
 
Submission date Apr 03, 2008
Last update date Aug 28, 2018
Contact name Gretchen Duvall
Organization name Cedars Sinai Medical Center
Street address 8700 Beverly BLVD
City Los Angeles
State/province CA
ZIP/Postal code 90048
Country USA
 
Platform ID GPL570
Series (1)
GSE11100 Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5 calculated Signal intensity
ABS_CALL The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2218.2 P 0.001102
AFFX-BioB-M_at 3342.1 P 0.000754
AFFX-BioB-3_at 1800.7 M 0.058444
AFFX-BioC-5_at 5674.7 P 0.000225
AFFX-BioC-3_at 5970.2 P 0.000127
AFFX-BioDn-5_at 7203.2 P 0.000081
AFFX-BioDn-3_at 33094.4 P 0.000081
AFFX-CreX-5_at 70799.8 P 0.000052
AFFX-CreX-3_at 83424 P 0.000044
AFFX-DapX-5_at 195.1 A 0.131361
AFFX-DapX-M_at 191.3 A 0.52976
AFFX-DapX-3_at 44.3 A 0.945787
AFFX-LysX-5_at 190.2 A 0.195266
AFFX-LysX-M_at 323.6 A 0.327079
AFFX-LysX-3_at 166 P 0.039661
AFFX-PheX-5_at 55.4 A 0.712257
AFFX-PheX-M_at 38.7 A 0.824672
AFFX-PheX-3_at 177.3 A 0.724854
AFFX-ThrX-5_at 173.4 A 0.368438
AFFX-ThrX-M_at 146.8 A 0.60308

Total number of rows: 54675

Table truncated, full table size 1487 Kbytes.




Supplementary file Size Download File type/resource
GSM279184.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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