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GEO accession:
Sample GSM279182
Query DataSets for GSM279182
Status
Public on Apr 03, 2009
Title
Pre Vac Patient 1
Sample type
RNA
Source name
Pre Vaccination tumor
Organism
Homo sapiens
Characteristics
Pre Vaccination tumor
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the Qiagen kit instructions.
Label
biotin
Label protocol
Standard Affymetrix
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
RNA from frozen Glioblastoma Multiforme tumor
Data processing
MAS5 Normalized
Submission date
Apr 03, 2008
Last update date
Aug 28, 2018
Contact name
Gretchen Duvall
Organization name
Cedars Sinai Medical Center
Street address
8700 Beverly BLVD
City
Los Angeles
State/province
CA
ZIP/Postal code
90048
Country
USA
Platform ID
GPL570
Series (1)
GSE11100
Dendritic Cell Vaccine against Glioblastoma Multiforme Patients
Relations
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5 calculated Signal intensity
ABS_CALL
The call in an absolute analysis that indicates if the transcript was Present P- Absent A- Marginal M- or No Call NC
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2789.5
P
0.001593
AFFX-BioB-M_at
3548.3
P
0.00039
AFFX-BioB-3_at
1530.3
P
0.00844
AFFX-BioC-5_at
6080.8
P
0.000127
AFFX-BioC-3_at
5159.4
P
0.000052
AFFX-BioDn-5_at
7684.5
P
0.000044
AFFX-BioDn-3_at
36776.8
P
0.000081
AFFX-CreX-5_at
78796.6
P
0.000052
AFFX-CreX-3_at
86205.3
P
0.000044
AFFX-DapX-5_at
254.3
A
0.0727
AFFX-DapX-M_at
139.3
A
0.60308
AFFX-DapX-3_at
59.1
A
0.749204
AFFX-LysX-5_at
157.4
A
0.139482
AFFX-LysX-M_at
39.4
A
0.760937
AFFX-LysX-3_at
101.2
A
0.327079
AFFX-PheX-5_at
31.2
A
0.737173
AFFX-PheX-M_at
27.1
A
0.824672
AFFX-PheX-3_at
330.1
A
0.51489
AFFX-ThrX-5_at
123.8
A
0.60308
AFFX-ThrX-M_at
25.7
A
0.904333
Total number of rows:
54675
Table truncated, full table size
1488 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM279182.CEL.gz
5.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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