|
| Status |
Public on Sep 30, 2020 |
| Title |
Thyroid_carcinoma_7 [miRNA] |
| Sample type |
RNA |
| |
|
| Source name |
Thyroid_carcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
disease: Thyroid_carcinoma
histology: PTC
age: 61
Sex: F
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from snap-frozen tissues with Trizol reagent.
|
| Label |
Cy3
|
| Label protocol |
Total RNA from each sample was labeled according to the manufacturers recommendations
|
| |
|
| Hybridization protocol |
Standard Agilent hybridization protocol
|
| Scan protocol |
Standard Agilent scanning protocol with Agilent SureScan microarray scanner (G2505C)
|
| Data processing |
Scanned images were processed with Agilent Feature Extraction v10.7 with default parameters to obtain raw data. Raw data were imported in R and processed using the limma package. Spot-level raw intensities were background-corrected using the normexp method and normalized with quantile normalization.
|
| |
|
| Submission date |
Sep 19, 2017 |
| Last update date |
Sep 30, 2020 |
| Contact name |
Matteo Dugo |
| E-mail(s) |
dugo.matteo@hsr.it
|
| Organization name |
IRCCS Ospedale San Raffaele
|
| Department |
Department of Medical Oncology
|
| Street address |
via Olgettina 60
|
| City |
Milan |
| ZIP/Postal code |
20132 |
| Country |
Italy |
| |
|
| Platform ID |
GPL20194 |
| Series (2) |
| GSE103996 |
miRNA and gene expression profiling in human thyroid carcinomas and non-neoplastic thyroids [miRNA] |
| GSE104006 |
miRNA and gene expression profiling in human thyroid carcinomas and non-neoplastic thyroids |
|
| Relations |
| Reanalysis of |
GSM1888207 |
