|
| Status |
Public on Mar 01, 2018 |
| Title |
Dlx4-KO P1#2 |
| Sample type |
SRA |
| |
|
| Source name |
Skin
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: Skin
age: Post-natal day 1
genotype: Dlx4-KO
|
| Extracted molecule |
total RNA |
| Extraction protocol |
cDNA was prepared using the NEBnext kit and library was generated using the NuGen kit and Mondrian automated system.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
Illumina Casava1.8.2 software was used for BCL conversion and demultiplexing
Reads were mapped to mm10 using TopHat 2.1.0 with default settings
RPKM values and ANOVA comparisons were calculated using Partek GS 6.6
Genome_build: mm10
|
| |
|
| Submission date |
Sep 18, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Maria Irene Morasso |
| E-mail(s) |
morassom@mail.nih.gov
|
| Phone |
3014357842
|
| Organization name |
NIAMS NIH
|
| Lab |
Laboratory of Skin Biology
|
| Street address |
Bldg 50
|
| City |
Bethesda |
| State/province |
Maryland |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL21493 |
| Series (1) |
| GSE103971 |
RNASeq analysis to detect any molecular changes in skin of Dlx4 ablated mice compared to Wild type littermates. |
|
| Relations |
| BioSample |
SAMN07664545 |
| SRA |
SRX3196190 |
