|
Status |
Public on Nov 06, 2017 |
Title |
468_smp_dac_rep1 |
Sample type |
RNA |
|
|
Source name |
468_smp_dac
|
Organism |
Homo sapiens |
Characteristics |
cell line: MDA-MB-468 genotype/variation: SMP scramble atra tx: 0 nM decitabine tx: 1 uM replicate: 1
|
Growth protocol |
All cells grown in DMEM with 10% FBS, 1x antibiotic-antimycotic, 0.25 ug/mL puromycin.
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA extracted with Trizol reagent and PureLink RNA kit (Invitrogen).
|
Label |
biotin
|
Label protocol |
standard Affymetrix protocol
|
|
|
Hybridization protocol |
standard Affymetrix protocol
|
Scan protocol |
standard Affymetrix protocol
|
Description |
CHP files derived from Transcriptome Analysis Console
|
Data processing |
affymetrix-algorithm-name = rma-gene-full affymetrix-algorithm-version = 1.0 affymetrix-array-type = HuGene-2_0-st program-name = Expression Console program-version = 1.3.1.187
|
|
|
Submission date |
Sep 04, 2017 |
Last update date |
Jan 23, 2018 |
Contact name |
Paola Marcato |
Organization name |
Dalhousie University
|
Department |
Pathology
|
Street address |
PO Box 15000
|
City |
Halifax |
State/province |
Nova Scotia |
ZIP/Postal code |
B3H 4R2 |
Country |
Canada |
|
|
Platform ID |
GPL16686 |
Series (2) |
GSE103426 |
Expression profiling of MDA-MB-231 and MDA-MB-468 after ALDH1A3 manipulation, all-trans retinoic acid treatment, decitabine treatment |
GSE103427 |
Profiling of the transcriptional response to all-trans retinoic acid in breast cancer cells reveals RARE-independent mechanisms of gene expression |
|