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GEO help: Mouse over screen elements for information. |
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Status |
Public on Dec 01, 2008 |
Title |
Replicate 1 for HCC1143 cell line |
Sample type |
RNA |
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Source name |
Human cell line
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Organism |
Homo sapiens |
Characteristics |
No treatment. See ATCC/DSMZ for cell line details.
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Extracted molecule |
total RNA |
Extraction protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
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Label |
Biotin
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Label protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
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Hybridization protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
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Scan protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
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Description |
Cell line, RPMI1640, 10 %FBS, 2mM L-glutamine, 10mM HEPES
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Data processing |
gcRMA (justGCRMA in R/Bioconductor)
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Submission date |
Mar 14, 2008 |
Last update date |
Mar 19, 2008 |
Contact name |
Alex T. Adai |
E-mail(s) |
adai.alex@gene.com
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Organization name |
Genentech
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Department |
Oncology Diagnostics
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Lab |
David Dornan
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Street address |
X
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City |
X |
State/province |
X |
ZIP/Postal code |
X |
Country |
USA |
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Platform ID |
GPL570 |
Series (1) |
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Data table header descriptions |
ID_REF |
Affymetrix probeset id |
VALUE |
Log base 2 of signal intensity (gcRMA normalized) |
Data table |
ID_REF |
VALUE |
1007_s_at |
11.9459344997941 |
1053_at |
8.954726787841 |
117_at |
2.70869477978139 |
121_at |
5.3797825897812 |
1255_g_at |
2.01795715450768 |
1294_at |
2.13461744385449 |
1316_at |
2.66578791631181 |
1320_at |
2.70903326425317 |
1405_i_at |
4.32896314295844 |
1431_at |
2.90118251809831 |
1438_at |
4.89646856818918 |
1487_at |
7.94788316397427 |
1494_f_at |
2.03547199753777 |
1552256_a_at |
9.26318519792855 |
1552257_a_at |
9.89786689816752 |
1552258_at |
2.56390469163403 |
1552261_at |
2.73284928164480 |
1552263_at |
6.19701106634882 |
1552264_a_at |
9.48264265441789 |
1552266_at |
2.86040793851105 |
Total number of rows: 54675
Table truncated, full table size 1480 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM274677.cel.gz |
5.1 Mb |
(ftp)(http) |
CEL |
Processed data included within Sample table |
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