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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 10, 2017 |
| Title |
T-1082_st2_rep1 |
| Sample type |
SRA |
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| Source name |
Fertile tomato
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| Organism |
Solanum lycopersicum |
| Characteristics |
tissue: floral bud
developmental stage: stage 2
phenotype: male fertile
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| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction method
RNA-seq library (Zhong et al, Cold Spring Harbor Protocols, 940-949, 2011)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Illumina Hiseq 2500 for base calling
Digital expressions with 98% identity threshold using CLC Genomics Workbenchi 6.0
Normalization and transformation of digital expression data using CLC Genomics Workbench 6.0 internal algorithms
Genome_build: ITAG2.3_CDS (http://solgenomics.net)
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| Submission date |
Aug 08, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Koeun Han |
| E-mail(s) |
hke1221@snu.ac.kr
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| Organization name |
Seoul National University
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| Street address |
Gwanak-ro 1
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| City |
Seoul |
| ZIP/Postal code |
08826 |
| Country |
South Korea |
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| Platform ID |
GPL19694 |
| Series (1) |
| GSE102374 |
RNA transcriptome analysis of floral buds of male-fertile and male-sterile tomato |
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| Relations |
| BioSample |
SAMN07462273 |
| SRA |
SRX3073177 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2735626_F2_GTAGAG_L001_R1_001_paired_RNA-Seq.txt.gz |
559.9 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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